Search result

BaseInfo

ncRNA ID osa-miR1868
Species Oryza sativa
Class miRNA
Genome position Chr4:19715448-19715616 [+]
Reference genome MSU7
Source miRBase
Length 24
Mature sequence(if miRNA) 47 - UCACGGAAAACGAGGGAGCAGCCA - 70
Stem-loop(if miRNA) GG    GC       --       UA    AC       A       CUC                C      GG   UGU  U
  AAAG  UUUGUAA  AACACAC  UUUG  AGUUUGG AAGCGUG   ACGGAAAACGAGGGAG AGCCAA  CAU   UC U
  ||||  |||||||  |||||||  ||||  ||||||| |||||||   |||||||||||||||| ||||||  |||   || A
  UUUC  AAACGUU  UUGUGUG  AAAU  UCGAGCC UUCGCAC   UGCCUUUUGCUCCUUC UCGGUU  GUA   GG C
UA    AA       CU       GC    CU       C       AAA                A      AA   UUU  C
Stem-loop sequence GGAAAGGCUUUGUAAAACACACUAUUUGACAGUUUGGAAAGCGUGCUCACGGAAAACGAGGGAGCAGCCAAGGCAUUGUUCUUACCGGUUUAUGAAUUGGCUACUUCCUCGUUUUCCGUAAACACGCUUCCCGAGCUUCUAAACGGUGUGUUUCUUGCAAAAACUUUAU

Reference

1 PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains";
Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C;
Genome Res. 18:1456-1465(2008).
2 PMID:19903869
"Rice MicroRNA effector complexes and targets";
Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y;
Plant Cell. 21:3421-3435(2009).