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BaseInfo

ncRNA ID	novel_zma_miR855
Species	Zea mays
Class	miRNA
Genome position	Chr2:19948490-19948557 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089705
Length	24
Mature sequence(if miRNA)	1 - AAAAGUACUCGGCAAAGAAGGAUU - 24
Stem-loop(if miRNA)	--     U               A    C  -  G   AAAAG ACUCGGCAAAGAAGG UUUG CG AU U   ||||| ||||||||||||||| |||| || || A   UUUUC UGAGCCGUUUUUUCC GAGC GU UG C UU     -               -    C  A  U
Stem-loop sequence	AAAAGUACUCGGCAAAGAAGGAUUUGCCGAUGUACUGUAUGCCGAGCCUUUUUUGCCGAGUCUUUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ239383.1	ncRNA:24   UUAGGAAGAAACGGCUCAUGAAAA   1   ||*||||||||||||||||||||| targets:29   AAGCCUUCUUUGCCGAGUACUUUU   52 Target Full Sequence	0.0	Sequence 5378 from Patent EP2985353	NA	coding protein	psRNATarget
JB167714.1	ncRNA:24   UUAGGAAGAAACGGCUCAUGAAAA   1   ||*||||||||||||||||||||| targets:29   AAGCCUUCUUUGCCGAGUACUUUU   52 Target Full Sequence	0.0	Sequence 5378 from Patent EP2559767	NA	coding protein	psRNATarget
HI407253.1	ncRNA:24   UUAGGAAGAAACGGCUCAUGAAAA   1   ||*||||||||||||||||||||| targets:29   AAGCCUUCUUUGCCGAGUACUUUU   52 Target Full Sequence	0.0	Sequence 5378 from Patent EP2074227	NA	coding protein	psRNATarget
EU974507.1	ncRNA:24   UUAG--------GAAGAAACGGCUCAUGAAAA   1   *|||--------|||||||||||||||||||| targets:434   CAUCGGUAACAGCUUCUUUGCCGAGUACUUUU   465 Target Full Sequence	0.0	Zea mays clone 451014 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
HI406772.1	ncRNA:24   UUAG---GAAGAAACGGCUCAUGAAAA   1   |=||---|||||||||||||||||*|* targets:92   AGUCUGCCUUCUUUGCCGAGUACUAUG   118 Target Full Sequence	2.5	Sequence 4897 from Patent EP2074227	NA	coding protein	psRNATarget
JB167233.1	ncRNA:24   UUAG---GAAGAAACGGCUCAUGAAAA   1   |=||---|||||||||||||||||*|* targets:92   AGUCUGCCUUCUUUGCCGAGUACUAUG   118 Target Full Sequence	2.5	Sequence 4897 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238902.1	ncRNA:24   UUAG---GAAGAAACGGCUCAUGAAAA   1   |=||---|||||||||||||||||*|* targets:92   AGUCUGCCUUCUUUGCCGAGUACUAUG   118 Target Full Sequence	2.5	Sequence 4897 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008645204.2	ncRNA:24   UUAGGAAGAAACGGCUCAUGAAAA   1   |||**|||||||||*||||||||| targets:3201   AAUAGUUCUUUGCCAAGUACUUUU   3224 Target Full Sequence	1.5	PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020553261.1	ncRNA:24   UUAGGAAGAAACGGCUCAUGAAAA   1   |||**|||||||||*||||||||| targets:3208   AAUAGUUCUUUGCCAAGUACUUUU   3231 Target Full Sequence	1.5	PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008645203.2	ncRNA:24   UUAGGAAGAAACGGCUCAUGAAAA   1   |||**|||||||||*||||||||| targets:3269   AAUAGUUCUUUGCCAAGUACUUUU   3292 Target Full Sequence	1.5	PREDICTED: Zea mays putative protein of unknown function (DUF640) domain family protein (LOC100278742), transcript variant X1, mRNA	NA	coding protein	psRNATarget