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BaseInfo

ncRNA ID novel_zma_miR851
Species Zea mays
Class miRNA
Genome position Chr10:110885701-110885781 [-]
Reference genome RefGen_v4
Source SRR2089710
Length 21
Mature sequence(if miRNA) 61 - UAAGUCGUUCUAGCUUUUCUA - 81
Stem-loop(if miRNA) --              U      -------------         CU
  UAAGUCGUUCUAGC UUUCUA             GAUACAUAG  U
  |||||||||||||| ||||||             |||||||||
  AUUCAGCAAGAUCG AAAGAU             CUAUGUAUC  U
AU              U      CCAUUGUAAUACA         AA
Stem-loop sequence UAAGUCGUUCUAGCUUUUCUAGAUACAUAGCUUUAACUAUGUAUCACAUAAUGUUACCUAGAAAUGCUAGAACGACUUAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT035138.2
ncRNA:21   AUCUUUUCGAUCUUGCUGAAU   1
  *|||=|||||||||||||||*
targets:1401   CAGAGAAGCUAGAACGACUUC   1421

2.0 Zea mays full-length cDNA clone ZM_BFb0041P14 mRNA, complete cds NA coding protein psRNATarget
BT034081.1
ncRNA:21   AUCUUUUCGAUCUUGCUGAAU   1
  *|||=|||||||||||||||*
targets:1775   CAGAGAAGCUAGAACGACUUC   1795

2.0 Zea mays full-length cDNA clone ZM_BFc0032K16 mRNA, complete cds NA coding protein psRNATarget
NM_001137274.1
ncRNA:21   AUCUUUUCGAUCUUGCUGAAU   1
  *|||=|||||||||||||||*
targets:1775   CAGAGAAGCUAGAACGACUUC   1795

2.0 Zea mays 4-coumarate--CoA ligase-like 7 (LOC100191850), mRNA NA coding protein psRNATarget
EU956613.1
ncRNA:21   AUCUUUUCGAUCUUGCUGAAU   1
  *|||=|||||||||||||||*
targets:1780   CAGAGAAGCUAGAACGACUUC   1800

2.0 Zea mays clone 1568159 4-coumarate--CoA ligase 2 mRNA, complete cds NA coding protein psRNATarget
EU956764.1
ncRNA:21   AUCUUUUCGAUCUUGCUGAAU   1
  *|||=|||||||||||||||*
targets:1880   CAGAGAAGCUAGAACGACUUC   1900

2.0 Zea mays clone 1573096 mRNA sequence NA coding protein psRNATarget
EZ074836.1
ncRNA:21   AUCUUUUCGAUCUUGCUGAAU   1
  *||=|||||||*|||||||||
targets:24   AAGGAAAGCUAAAACGACUUA   44

2.5 TSA: Zea mays contig10473, mRNA sequence NA coding protein psRNATarget
XM_020546942.1
ncRNA:21   AUCUUUUCGAUCUUGCUGAAU   1
  ||*|||||||*||||||||||
targets:219   UAAAAAAGCUUGAACGACUUA   239

2.5 PREDICTED: Zea mays uncharacterized LOC109943549 (LOC109943549), mRNA NA coding protein psRNATarget
XM_008674394.2
ncRNA:21   AUCUUUUCGAUCUUGCUGAAU   1
  |**|=|||||||||||||||*
targets:1802   UUCAGAAGCUAGAACGACUUC   1822

3.0 PREDICTED: Zea mays 4-coumarate--CoA ligase-like 7 (LOC100191850), transcript variant X1, mRNA NA coding protein psRNATarget