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BaseInfo

ncRNA ID osa-miR1423-5p
Species Oryza sativa
Class miRNA
Genome position Chr4:19715117-19715252 [+]
Reference genome MSU7
Source miRBase
Length 24
Mature sequence(if miRNA) 21 - AGGCAACUACACGUUGGGCGCUCG - 44
Stem-loop(if miRNA)      A   U                    A    -             A        -     -C  G
GCACA CAC AGUAUUUGGGAGGCAACUAC CGUU GGGCGCUCGAUCC GGGGUGGG AAAAU  GG C
||||| ||| |||||||||||||||||||| |||| ||||||||||||| |||||||| |||||  ||
CGUGU GUG UCAUAAACCCUCUGUUGAUG GCGA CCCGCGAGCUAGG CCCCACCC UUUUG  CC G
     C   U                    -    A             C        C     CA  C
Stem-loop sequence GCACAACACUAGUAUUUGGGAGGCAACUACACGUUGGGCGCUCGAUCCAGGGGUGGGAAAAUCGGGCGCCCACGUUUUCCCCACCCCCGGAUCGAGCGCCCAAGCGGUAGUUGUCUCCCAAAUACUUGUGCUGUGC

Reference

1 PMID:18353984
"Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)";
Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ;
Proc Natl Acad Sci U S A. 105:4951-4956(2008).
2 PMID:18312648
"Identification of novel and candidate miRNAs in rice by high throughput sequencing";
Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK;
BMC Plant Biol. 8:25(2008).
3 PMID:19903869
"Rice MicroRNA effector complexes and targets";
Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y;
Plant Cell. 21:3421-3435(2009).
4 PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains";
Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C;
Genome Res. 18:1456-1465(2008).