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BaseInfo

ncRNA ID novel_zma_miR835
Species Zea mays
Class miRNA
Genome position Chr2:170852309-170852486 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089712;SRR2089715;SRR2089706
Length 21
Mature sequence(if miRNA) 1 - AUAUAAUAGGAGUAGGAUGGA - 21
Stem-loop(if miRNA) --   A      GA        C    U                  -UA     C  -AUA CA      AAAAUUUCUGACAAGUUUAAA
  UAU UUACUC  AUUAUAUA AAAA UUUAAGUUUAAAUUCAUU   UUUUA CU    G  AGAGAU                     U
  ||| ||||||  |||||||| |||| ||||||||||||||||||   ||||| ||    |  ||||||
  GUA GAUGAG  UAAUAUAU UUUU AGGUUCAAGUUUAAGUAA   AAAAU GA    A  UUUUUU                     U
AG   G      GA        C    U                  UAC     C  CAUU --      CUUGUAAAAUCGGCUAAAAAA
Stem-loop sequence UAUAUUACUCGAAUUAUAUACAAAAUUUUAAGUUUAAAUUCAUUUAUUUUACCUAUAGCAAGAGAUAAAAUUUCUGACAAGUUUAAAUUAAAAAAUCGGCUAAAAUGUUCUUUUUUAUUACAGCUAAAACAUAAUGAAUUUGAACUUGGAUUUUUCUAUAUAAUAGGAGUAGGAUGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008675593.2
ncRNA:21   AGGUAGGAUGAGGAUAAUAUA   1
  ||||||=||||||*|||||||
targets:1265   UCCAUCUUACUCCAAUUAUAU   1285

2.5 PREDICTED: Zea mays uncharacterized LOC103649908 (LOC103649908), mRNA NA coding protein psRNATarget