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BaseInfo

ncRNA ID	novel_zma_miR831
Species	Zea mays
Class	miRNA
Genome position	Chr2:189531338-189531435 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089706
Length	21
Mature sequence(if miRNA)	78 - AAGAGUAUUGGAGGGGAUUGA - 98
Stem-loop(if miRNA)	--                   G     AC                   A   AAGAGUAUUGGAGGGGAUU AGGGG  UAUAAUCCCUUGUUAUUUA U   ||||||||||||||||||| |||||  |||||||||||||||||||   UUCUCAUAACUUUUCCUAG UUUCC  AUAUUAGGGAACGAUAAGU U CU                   G     CA                   U
Stem-loop sequence	AAGAGUAUUGGAGGGGAUUGAGGGGACUAUAAUCCCUUGUUAUUUAAUUUUGAAUAGCAAGGGAUUAUAACCCUUUGGAUCCUUUUCAAUACUCUUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008654495.2	ncRNA:21   AGUUAGGGGAGGUUAUGAGAA   1   ||||||||||||||||||||| targets:1333   UCAAUCCCCUCCAAUACUCUU   1353 Target Full Sequence	0.0	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
EU942133.1	ncRNA:21   AGUUAGGGGAGGUUAUGAGAA   1   |=||||=|||||||||||||| targets:189   UUAAUCUCCUCCAAUACUCUU   209 Target Full Sequence	1.0	Zea mays clone 1476690 mRNA sequence	NA	coding protein	psRNATarget
EU941788.1	ncRNA:21   AGUUAGGGGAGGUUAUGAGAA   1   |=||||=|||||||||||||| targets:179   UUAAUCUCCUCCAAUACUCUU   199 Target Full Sequence	1.0	Zea mays clone 1470119 mRNA sequence	NA	coding protein	psRNATarget
EZ107077.1	ncRNA:21   AGUUAGGGGAGGUUAUGAGAA   1   |=||||=|||||||||||=|| targets:119   UUAAUCUCCUCCAAUACUUUU   139 Target Full Sequence	2.5	TSA: Zea mays contig42735, mRNA sequence	NA	coding protein	psRNATarget
XM_008654031.2	ncRNA:21   AGUUAGGGGAGGUUAUGAGAA   1   |||||||||||||*||||||| targets:1680   UCAAUCCCCUCCAUUACUCUU   1700 Target Full Sequence	1.5	PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU958579.1	ncRNA:21   AGUUAGGGGAGGUUAUGAGAA   1   *|||||=|||=|||||||||| targets:107   ACAAUCUCCUUCAAUACUCUU   127 Target Full Sequence	2.5	Zea mays clone 1703813 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
JB166530.1	ncRNA:21   AGUUAGGGGAGGUUAUGAGAA   1   |||||||=|||||*||||||| targets:94   UCAAUCCUCUCCAUUACUCUU   114 Target Full Sequence	2.5	Sequence 4194 from Patent EP2559767	NA	coding protein	psRNATarget
HI406069.1	ncRNA:21   AGUUAGGGGAGGUUAUGAGAA   1   |||||||=|||||*||||||| targets:94   UCAAUCCUCUCCAUUACUCUU   114 Target Full Sequence	2.5	Sequence 4194 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238199.1	ncRNA:21   AGUUAGGGGAGGUUAUGAGAA   1   |||||||=|||||*||||||| targets:94   UCAAUCCUCUCCAUUACUCUU   114 Target Full Sequence	2.5	Sequence 4194 from Patent EP2985353	NA	coding protein	psRNATarget
BT036654.1	ncRNA:21   AGUUAGGGGAGGUUAUGAGAA   1   |||||||=|||||*||||||| targets:1047   UCAAUCCUCUCCAUUACUCUU   1067 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0128D05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001349849.1	ncRNA:21   AGUUAGGGGAGGUUAUGAGAA   1   |||||||=|||||*||||||| targets:880   UCAAUCCUCUCCAUUACUCUU   900 Target Full Sequence	2.5	Zea mays uncharacterized LOC100194187 (LOC100194187), mRNA	NA	coding protein	psRNATarget
EU952717.1	ncRNA:21   AGUUAGGGGAGGUUAUGAGAA   1   |||||||=|||||*||||||| targets:880   UCAAUCCUCUCCAUUACUCUU   900 Target Full Sequence	2.5	Zea mays clone 1287070 zinc finger protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ106534.1	ncRNA:21   AGUUAGGGGAGGUUAUGAGAA   1   |=|||||*||||||||||=|| targets:120   UUAAUCCACUCCAAUACUUUU   140 Target Full Sequence	2.5	TSA: Zea mays contig42192, mRNA sequence	NA	coding protein	psRNATarget
BT055357.1	ncRNA:21   AGUUAGGGGAGGUUAUGAGAA   1   |=|||||*||||||||||=|| targets:404   UUAAUCCACUCCAAUACUUUU   424 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0070A22 mRNA, complete cds	NA	coding protein	psRNATarget
AY103783.2	ncRNA:21   AGUUAGGGGAGGUUAUGAGAA   1   |=|||||*||||||||||=|| targets:764   UUAAUCCACUCCAAUACUUUU   784 Target Full Sequence	2.5	Zea mays PCO084580 mRNA sequence	NA	coding protein	psRNATarget
EZ098881.1	ncRNA:21   AGUUAGGGGAGGUUAUGAGAA   1   |=|||||||||||||*||||* targets:83   UUAAUCCCCUCCAAUCCUCUC   103 Target Full Sequence	2.5	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
BT062774.1	ncRNA:21   AGUUAGGGGAGGUUAUGAGAA   1   ||||||*||||||*||||||| targets:209   UCAAUCACCUCCAUUACUCUU   229 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0344J23 mRNA, complete cds	NA	coding protein	psRNATarget
BT019141.1	ncRNA:21   AGUUAGGGGAGGUUAUGAGAA   1   ||||||*||||||*||||||| targets:650   UCAAUCACCUCCAUUACUCUU   670 Target Full Sequence	2.5	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
XM_020542853.1	ncRNA:21   AGUUAGGGGAGGUUAUGAGAA   1   ||||||*||||||*||||||| targets:1549   UCAAUCACCUCCAUUACUCUU   1569 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103636499), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542855.1	ncRNA:21   AGUUAGGGGAGGUUAUGAGAA   1   ||||||*||||||*||||||| targets:1552   UCAAUCACCUCCAUUACUCUU   1572 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103636499), transcript variant X4, mRNA	NA	coding protein	psRNATarget
HI406796.1	ncRNA:21   AGUUAGGGGAGGUUAUGAGAA   1   |=||*||||||||||||*||| targets:93   UUAAACCCCUCCAAUACCCUU   113 Target Full Sequence	2.5	Sequence 4921 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238926.1	ncRNA:21   AGUUAGGGGAGGUUAUGAGAA   1   |=||*||||||||||||*||| targets:93   UUAAACCCCUCCAAUACCCUU   113 Target Full Sequence	2.5	Sequence 4921 from Patent EP2985353	NA	coding protein	psRNATarget
JB167257.1	ncRNA:21   AGUUAGGGGAGGUUAUGAGAA   1   |=||*||||||||||||*||| targets:93   UUAAACCCCUCCAAUACCCUU   113 Target Full Sequence	2.5	Sequence 4921 from Patent EP2559767	NA	coding protein	psRNATarget
EU952184.1	ncRNA:21   AGUUAGGGGAGGUUAUGAGAA   1   **|||==|||||||||||||* targets:368   CAAAUUUCCUCCAAUACUCUC   388 Target Full Sequence	3.0	Zea mays clone 1218233 PDE191 mRNA, complete cds	NA	coding protein	psRNATarget