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BaseInfo

ncRNA ID novel_zma_miR830
Species Zea mays
Class miRNA
Genome position Chr10:104837614-104837794 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089715;SRR2287031;SRR2287159;SRR2287160;SRR2287161;SRR2287163;SRR2287164;SRR2287165;SRR2089698;SRR2089699;SRR2089700;SRR2089701;SRR2089702;SRR2089703;SRR2089704;SRR2089705;SRR2089706;SRR2089707;SRR2089708
Length 21
Mature sequence(if miRNA) 1 - UUUCAAAGUUCGUGGACCUAA - 21
Stem-loop(if miRNA) --                 C                  -GAA           AUA       CAUCCCUAA    GUAAAAAUGGUACAUUAC
  AGGUCCACGAACUUUGA AAUGCAUUUCUAGGUCUU    CUUGUUAAGUG   UACCACA         ACUU                  A
  ||||||||||||||||| ||||||||||||||||||    |||||||||||   |||||||         ||||
  UCCAGGUGCUUGAAACU UUAUGUAAAGAUCCAGGA    GAACAAUUUAC   GUGGUGU         AACC                  G
AA                 -                  AUUG           CGA       -----CACC    AUACGAGGUUUUUAUCUG
Stem-loop sequence AGGUCCACGAACUUUGACAAUGCAUUUCUAGGUCUUGAACUUGUUAAGUGAUAUACCACACAUCCCUAAACUUGUAAAAAUGGUACAUUACAGGUCUAUUUUUGGAGCAUACCAACCACUGUGGUGAGCCAUUUAACAAGGUUAAGGACCUAGAAAUGUAUUUCAAAGUUCGUGGACCUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU945303.1
ncRNA:21   AAUCCAGGUGCUUGAAACUUU   1
  |||||||=|||=|||||||||
targets:367   UUAGGUCUACGGACUUUGAAA   387

2.5 Zea mays clone 257365 mRNA sequence NA coding protein psRNATarget