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BaseInfo

ncRNA ID	ath-miRf10016-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	25
Mature sequence(if miRNA)	NA - UUACUCGACCUGGGGGUCGAGUGGU - NA
Stem-loop(if miRNA)	GA     A     GU          -U    -  AA GAG  CACUC ACCUC  GGUCGAGUGG  GAGG CG  G |||  ||||| |||||  ||||||||||  |||| || CUC  GUGAG UGGGG  CCAGCUCAUU  CUUU GU  U    UG     C     GU          UU    A  GG
Stem-loop sequence	GAGGACACUCAACCUCGUGGUCGAGUGGUGAGGCGAAGUGGUGAUUUCUUUUACUCGACCUGGGGGUCGAGUGGUCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT025674.1	ncRNA:25   UGGUGAGCUGGGGGUCCAGCUCAUU   1   *|=|||||||||||||||||||||| targets:186   UCUACUCGACCCCCAGGUCGAGUAA   210 Target Full Sequence	0.0	Arabidopsis thaliana	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:25   UGGUGAGCUGGGGGUCCAGCUCAUU   1   ||||||||||||||||||||||||= targets:1103   ACCACUCGACCCCCAGGUCGAGUAG   1127 Target Full Sequence	1.0	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
BT015478.1	ncRNA:25   UGGU--GAGCUGGGGGUCCAGCUCAUU   1   ||||--|||||||||||||||||||=| targets:133   ACCAUACUCGACCCCCAGGUCGAGUGA   159 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:25   UGGU--GAGCUGGGGGUCCAGCUCAUU   1   ||||--|||||||||||||||||||=| targets:133   ACCAUACUCGACCCCCAGGUCGAGUGA   159 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
EF183194.1	ncRNA:25   UGGUGAGCUGGGGGUCCAGCUCAUU   1   |||||||||||*||||||||||||= targets:448   ACCACUCGACCACCAGGUCGAGUAG   472 Target Full Sequence	2.0	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:25   UGG--UGAGCUGGGGGUCCAGCUCAUU   1   |||--|||||||||||*|||||||||* targets:305   ACCUUACUCGACCCCCUGGUCGAGUAU   331 Target Full Sequence	2.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT015478.1	ncRNA:25   UGGUGAGCUGGGGGUCCAGCUCAUU   1   =|||||||||||||*|||||||||* targets:229   GCCACUCGACCCCCUGGUCGAGUAU   253 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:25   UGGUGAGCUGGGGGUCCAGCUCAUU   1   *|=|||||||||||*|||||||||* targets:180   UCUACUCGACCCCCUGGUCGAGUAU   204 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:25   UGGUGAGCUGGGGGUCCAGCUCAUU   1   =|||||||||||||*|||||||||* targets:229   GCCACUCGACCCCCUGGUCGAGUAU   253 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT014714.1	ncRNA:25   UGGUGAGCUGGGGGUCCAGCUCAUU   1   *|=|||||||||||*|||||||||* targets:180   UCUACUCGACCCCCUGGUCGAGUAU   204 Target Full Sequence	2.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:25   UGGUGAGCUGGGGGUCCAGCUCAUU   1   ||||||||||||||*|||||||||= targets:89   ACCACUCGACCCCCUGGUCGAGUAG   113 Target Full Sequence	2.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:25   UGGUGAGCUGGGGGUCCAGCUCAUU   1   ||||||||||||||*|||||||||= targets:123   ACCACUCGACCCCCUGGUCGAGUAG   147 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:25   UGGUGAGCUGGGGGUCCAGCUCAUU   1   ||||||||||||||*|||||||||= targets:498   ACCACUCGACCCCCUGGUCGAGUAG   522 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:25   UGGUGAGCUGGGGGUCCAGCUCAUU   1   ||||||||||||||*|||||||||= targets:498   ACCACUCGACCCCCUGGUCGAGUAG   522 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183042.1	ncRNA:25   UGGUGAGCUGGGGGUCCAGCUCAUU   1   |=||||||||||||*|||||||||= targets:1570   AUCACUCGACCCCCUGGUCGAGUAG   1594 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
AY231407.1	ncRNA:25   UGGUGAGCUGGGGGUCCAGCUCAUU   1   |==||*||||||||*|||||||||* targets:582   AUUACYCGACCCCCUGGUCGAGUAU   606 Target Full Sequence	2.5	Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds	NA	coding protein	psRNATarget
AY227642.1	ncRNA:25   UGGUGAGCUGGGGGUCCAGCUCAUU   1   ||||||||||**||||||||||||= targets:807   ACCACUCGACAACCAGGUCGAGUAG   831 Target Full Sequence	3.0	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget