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BaseInfo

ncRNA ID	novel_zma_miR829
Species	Zea mays
Class	miRNA
Genome position	Chr2:191304836-191304998 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089714;SRR5451004;SRR5451005;SRR2089699;SRR2089702;SRR2089703;SRR2089706;SRR2089707
Length	24
Mature sequence(if miRNA)	140 - AGAAAACACUCGGCGAAGAGGCUC - 163
Stem-loop(if miRNA)	--                    G                U     U       C        G UU              UU   AGAAAACACUCGGCGAAGAG CUCUUUGCCGAGUGUU UAUUU UGACACU GGCAAAGA U  CUUUGCCGAGUGUC  U   |||||||||||||||||||| |||||||||||||||| ||||| ||||||| |||||||| |  ||||||||||||||  U   UUUUUUGUGAGCCGUUUCUC GAGAAACGGCUCACAA AUAAA ACUGUGA CCGUUUCU G  GAAAUGGCUCACAG  U UC                    -                C     C       U        - GG              UU
Stem-loop sequence	AGAAAACACUCGGCGAAGAGGCUCUUUGCCGAGUGUUUUAUUUUUGACACUCGGCAAAGAGUUUCUUUGCCGAGUGUCUUUUUUUGACACUCGGUAAAGGGGUCUUUGCCUAGUGUCACAAAUACAACACUCGGCAAAGAGCUCUUUGCCGAGUGUUUUUUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001165647.1	ncRNA:24   CUCGGAGAAGCGGCUCACAAAAGA   1   *||==||||=|=|||||||||||| targets:83   AAGUUUCUUUGUCGAGUGUUUUCU   106 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
BT055423.1	ncRNA:24   CUCGGAGAAGCGGCUCACAAAAGA   1   *||==||||=|=|||||||||||| targets:83   AAGUUUCUUUGUCGAGUGUUUUCU   106 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   CUCGGAGAAGCGGCUCACAAAAGA   1   ||||-||||=||||||||||||=| targets:105   GAGC-UCUUUGCCGAGUGUUUUUU   127 Target Full Sequence	2.5	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   CUCGGAGAAGCGGCUCACAAAAGA   1   ||||-||||=||||||||||||=| targets:105   GAGC-UCUUUGCCGAGUGUUUUUU   127 Target Full Sequence	2.5	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   CUCGGAGAAGCGGCUCACAAAAGA   1   ||||-||||=||||||||||||=| targets:105   GAGC-UCUUUGCCGAGUGUUUUUU   127 Target Full Sequence	2.5	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   CUCGGAGAAGCGGCUCACAAAAGA   1   *||==||||=|=|||||||||||| targets:2102   AAGUUUCUUUGUCGAGUGUUUUCU   2125 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   CUCGGAGAAGCGGCUCACAAAAGA   1   *||==||||=|=|||||||||||| targets:2102   AAGUUUCUUUGUCGAGUGUUUUCU   2125 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
EU949560.1	ncRNA:24   CUCGGAGAAGCGGCUCACAAAAGA   1   |=|=-||||=||||||||||||=| targets:590   GGGU-UCUUUGCCGAGUGUUUUUU   612 Target Full Sequence	2.5	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
XM_008654748.2	ncRNA:24   CUCGGAGAAGCGGCUCACAAAAGA   1   *||--|*||=|||||||||||||| targets:13   AAG--UGUUUGCCGAGUGUUUUCU   34 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103633067 (LOC103633067), mRNA	NA	coding protein	psRNATarget