Search result

BaseInfo

ncRNA ID	novel_zma_miR827
Species	Zea mays
Class	miRNA
Genome position	Chr2:198484444-198484605 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089712;SRR2089715;SRR2089705
Length	24
Mature sequence(if miRNA)	139 - AGCCCGGCUGCAAAUCAGGAUGUU - 162
Stem-loop(if miRNA)	--              U   GA         CA           -    -       -CA  UGC  A   AUAACAC   UA   AGCCCGGCUGCAAA CAG  UGUUUACAG  CCUCACAAAAA AAGA UAGACCU   CU   AG UCA       AAC  A   |||||||||||||| |||  |||||||||  ||||||||||| |||| |||||||   ||   || |||       |||   UCGGGUUGGCGUUU GUU  ACAAAUGUC  GGAGUGUUUUU UUCU AUUUGGA   GA   UC GGU       UUG  A CG              U   AA         AA           C    U       AUA  UAU  A   -GAUCCA   UA
Stem-loop sequence	AGCCCGGCUGCAAAUCAGGAUGUUUACAGCACCUCACAAAAAAAGAUAGACCUCACUUGCAGAUCAAUAACACAACUAAAAUGUUACCUAGUGGACUUAUAGAUAAGGUUUAUUCUUCUUUUUGUGAGGAACUGUAAACAAAUUGUUUUGCGGUUGGGCUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ073016.1	ncRNA:24   UUGUAGGACUAAACGUCGGCCCGA   1   ||||*||||=|||||||||||||| targets:60   AACAGCCUGGUUUGCAGCCGGGCU   83 Target Full Sequence	1.0	TSA: Zea mays contig08653, mRNA sequence	NA	coding protein	psRNATarget
XM_008680558.2	ncRNA:24   UUGUAGGACUAAACGUCGGCCCGA   1   ||||*=|||||||*|||||||||| targets:105   AACAAUCUGAUUUACAGCCGGGCU   128 Target Full Sequence	2.5	PREDICTED: Zea mays (+)-neomenthol dehydrogenase (LOC103653744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008680557.2	ncRNA:24   UUGUAGGACUAAACGUCGGCCCGA   1   ||||*=|||||||*|||||||||| targets:104   AACAAUCUGAUUUACAGCCGGGCU   127 Target Full Sequence	2.5	PREDICTED: Zea mays (+)-neomenthol dehydrogenase (LOC103653744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542106.1	ncRNA:24   UUGUAGGACUAAACGUCGGCCCGA   1   |||=*||||=|||||||||*|||| targets:1189   AACGGCCUGGUUUGCAGCCCGGCU   1212 Target Full Sequence	2.5	PREDICTED: Zea mays protein binding protein (LOC100281612), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542107.1	ncRNA:24   UUGUAGGACUAAACGUCGGCCCGA   1   |||=*||||=|||||||||*|||| targets:1192   AACGGCCUGGUUUGCAGCCCGGCU   1215 Target Full Sequence	2.5	PREDICTED: Zea mays protein binding protein (LOC100281612), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020542104.1	ncRNA:24   UUGUAGGACUAAACGUCGGCCCGA   1   |||=*||||=|||||||||*|||| targets:1338   AACGGCCUGGUUUGCAGCCCGGCU   1361 Target Full Sequence	2.5	PREDICTED: Zea mays protein binding protein (LOC100281612), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542105.1	ncRNA:24   UUGUAGGACUAAACGUCGGCCCGA   1   |||=*||||=|||||||||*|||| targets:1342   AACGGCCUGGUUUGCAGCCCGGCU   1365 Target Full Sequence	2.5	PREDICTED: Zea mays protein binding protein (LOC100281612), transcript variant X2, mRNA	NA	coding protein	psRNATarget