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BaseInfo

ncRNA ID novel_zma_miR824
Species Zea mays
Class miRNA
Genome position Chr2:204701407-204701447 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089711;SRR2089712;SRR2089713;SRR2287165;SRR2089701;SRR2089702;SRR2089706
Length 21
Mature sequence(if miRNA) 21 - GGGACGAGACCGACCGGAGGG - 41
Stem-loop(if miRNA) -G       AC     -    
  GGACGAG  CGACC GGAGG
  |||||||  ||||| ||||G
  CCUGCUU  GCUGG CCUUA
CG       --     G    
Stem-loop sequence GGGACGAGACCGACCGGAGGGAUUCCGGGUCGUUCGUCCGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008650344.1
ncRNA:21   GGGAGGCCA-GCCAGAGCAGGG   1
  |*|||||||-||||||||||||
targets:166   CGCUCCGGUUCGGUCUCGUCCC   187

3.0 PREDICTED: Zea mays uncharacterized LOC103629169 (LOC103629169), mRNA NA coding protein psRNATarget
EU941466.1
ncRNA:21   GGGAGGCCA-GCCAGAGCAGGG   1
  |*|||||||-||||||||||||
targets:172   CGCUCCGGUUCGGUCUCGUCCC   193

3.0 Zea mays clone 1454651 mRNA sequence NA coding protein psRNATarget
XM_008657400.2
ncRNA:21   GGGAGGCCAGCCAGAGCAGGG   1
  *||*||||||||||||||*||
targets:532   GCCACCGGUCGGUCUCGUACC   552

2.5 PREDICTED: Zea mays reticulon-like protein B1 (LOC103634811), mRNA NA coding protein psRNATarget