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BaseInfo

ncRNA ID novel_zma_miR823
Species Zea mays
Class miRNA
Genome position Chr2:208879033-208879112 [-]
Reference genome RefGen_v4
Source SRR2089709
Length 24
Mature sequence(if miRNA) 57 - GACGGUCCGCGACCUGGGCGCAGA - 80
Stem-loop(if miRNA) --   G     C A  UG     A  AG     -------  UU
  GAC GUCCG G CC  GGCGC GA  CGUCU       CC  C
  ||| ||||| | ||  ||||| ||  |||||       ||
  CUG CAGGC C GG  CCGCG CU  GCAGG       GG  U
GC   G     U G  GU     C  -A     UUUGUAU  UC
Stem-loop sequence GACGGUCCGCGACCUGGGCGCAGAAGCGUCUCCUUCUCUGGUAUGUUUGGACGAUCCGCGCCUGGGGCUCGGACGGUCCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT064568.2
ncRNA:24   AGA-----CGCGGGUCCAGCGCCUGGCAG   1
  |||-----|||*=*|||||||||||||||
targets:652   UCUUCCCCGCGGUGAGGUCGCGGACCGUC   680

3.0 Zea mays full-length cDNA clone ZM_BFc0183L06 mRNA, complete cds NA coding protein psRNATarget
XM_020539115.1
ncRNA:24   AGACGCGGGUCCAGCGCCUGGCAG   1
  *|*||*||||||*|||||||||||
targets:2630   CCGGCCCCCAGGGCGCGGACCGUC   2653

2.5 PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA NA coding protein psRNATarget