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BaseInfo

ncRNA ID	osa-miR5150-3p
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:18470790-18470868 [+]
Reference genome	MSU7
Source	miRBase
Length	24
Mature sequence(if miRNA)	44 - AGAAGCUGCAGCUGUCAGAAGCUC - 67
Stem-loop(if miRNA)	----                                         GUUUGGGGGAGCUUCUGACAGCUGCAGUUUCUCUUGU     ||||||||||||||||||||||||||||||||||||U     CAAACCCCCUCGAAGACUGUCGACGUCGAAGAGGAUC GGUA
Stem-loop sequence	GUUUGGGGGAGCUUCUGACAGCUGCAGUUUCUCUUGUUCUAGGAGAAGCUGCAGCUGUCAGAAGCUCCCCCAAACAUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235991.1	ncRNA:24   CUCGAAGACUGUCGACGUCGAAGA   1   |||||||||||||||||||=|||| targets:10   GAGCUUCUGACAGCUGCAGUUUCU   33 Target Full Sequence	1.5	Sequence 1986 from Patent EP2985353	NA	coding protein	psRNATarget
JB164322.1	ncRNA:24   CUCGAAGACUGUCGACGUCGAAGA   1   |||||||||||||||||||=|||| targets:10   GAGCUUCUGACAGCUGCAGUUUCU   33 Target Full Sequence	1.5	Sequence 1986 from Patent EP2559767	NA	coding protein	psRNATarget
HI403861.1	ncRNA:24   CUCGAAGACUGUCGACGUCGAAGA   1   |||||||||||||||||||=|||| targets:10   GAGCUUCUGACAGCUGCAGUUUCU   33 Target Full Sequence	1.5	Sequence 1986 from Patent EP2074227	NA	coding protein	psRNATarget
AK289079.1	ncRNA:24   CUCGAAGACUGUCGACGUCGAAGA   1   ||||||||*=|||||||||||||| targets:5   GAGCUUCUAGCAGCUGCAGCUUCU   28 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090095C15, full insert sequence	NA	coding protein	psRNATarget
XM_015789609.1	ncRNA:24   CUC-GAAGACUGUCGACGUCGAAGA   1   |||-|*||||=*||||||||||||* targets:1916   GAGGCAUCUGGAAGCUGCAGCUUCC   1940 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group tyrosine-specific transport protein 2 (LOC4342752), transcript variant X1, mRNA	tyrosine-specific transport protein 2(LOC4342752)	coding protein	psRNATarget

Reference

1	PMID:21525786 "Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus"; Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D; RNA Biol. 8:538-547(2011).
2	PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011).