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BaseInfo

ncRNA ID	novel_zma_miR796
Species	Zea mays
Class	miRNA
Genome position	Chr10:116183145-116183299 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089702
Length	24
Mature sequence(if miRNA)	1 - AAUGCUCUGGAUAGUUUGAUUGCA - 24
Stem-loop(if miRNA)	--         G   UG U    C               ---   AACUAUUAUUUUAUAUUUAACCCCUCUACCUAAA   CAAUCAAGC AUC  G GCAU CGAUCUAGAUCUAAU   UAU                                  A   ||||||||| |||  | |||| |||||||||||||||   |||   GUUAGUUUG UAG  C CGUA GUUAGAUCUAGGUUG   AAG                                  C AC         A   GU U    A               CCA   UAUACCUUCCCCAAUUUUCAUUUUAUCCAUAAUA
Stem-loop sequence	CAAUCAAGCGAUCUGGUGCAUCCGAUCUAGAUCUAAUUAUAACUAUUAUUUUAUAUUUAACCCCUCUACCUAAAACAUAAUACCUAUUUUACUUUUAACCCCUUCCAUAUGAAACCGUUGGAUCUAGAUUGAAUGCUCUGGAUAGUUUGAUUGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020551352.1	ncRNA:24   ACGUUAGUUUGAUAGGUCUCGUAA   1   |||||||||||||||||||||||| targets:45   UGCAAUCAAACUAUCCAGAGCAUU   68 Target Full Sequence	0.0	PREDICTED: Zea mays putative glutathione S-transferase family protein (LOC100272773), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU971778.1	ncRNA:24   ACGUUAGUUUGAUAGGUCUCGUAA   1   |||||||||||||||||||||||* targets:628   UGCAAUCAAACUAUCCAGAGCAUC   651 Target Full Sequence	1.0	Zea mays clone 370490 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU954880.1	ncRNA:24   ACGUUAGUUUGAUAGGUCUCGUAA   1   |||||||||||||||||||||||* targets:642   UGCAAUCAAACUAUCCAGAGCAUC   665 Target Full Sequence	1.0	Zea mays clone 1489976 ubiquitin-fusion protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008661850.2	ncRNA:24   ACGUUAGUUUGAUAGGUCUCGUAA   1   |||||||||||||||||||||||* targets:643   UGCAAUCAAACUAUCCAGAGCAUC   666 Target Full Sequence	1.0	PREDICTED: Zea mays membrane-anchored ubiquitin-fold protein 1 (LOC103639057), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008661851.2	ncRNA:24   ACGUUAGUUUGAUAGGUCUCGUAA   1   |||||||||||||||||||||||* targets:656   UGCAAUCAAACUAUCCAGAGCAUC   679 Target Full Sequence	1.0	PREDICTED: Zea mays membrane-anchored ubiquitin-fold protein 1 (LOC103639057), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008676293.2	ncRNA:24   ACGUUAGUUUGAUAGGUCUCGUAA   1   |||||||||||||||||||||||* targets:1534   UGCAAUCAAACUAUCCAGAGCAUC   1557 Target Full Sequence	1.0	PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103650724), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008676292.2	ncRNA:24   ACGUUAGUUUGAUAGGUCUCGUAA   1   |||||||||||||||||||||||* targets:1706   UGCAAUCAAACUAUCCAGAGCAUC   1729 Target Full Sequence	1.0	PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103650724), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676294.2	ncRNA:24   ACGUUAGUUUGAUAGGUCUCGUAA   1   |||||||||||||||||||||||* targets:1879   UGCAAUCAAACUAUCCAGAGCAUC   1902 Target Full Sequence	1.0	PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103650724), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008653636.2	ncRNA:24   ACGUUAGUUUGAUAGGUCUCGUAA   1   |||||||||||||||=|||||||* targets:2941   UGCAAUCAAACUAUCUAGAGCAUC   2964 Target Full Sequence	2.5	PREDICTED: Zea mays leucine-rich repeat extensin-like protein 3 (LOC103631839), mRNA	NA	coding protein	psRNATarget
JB163438.1	ncRNA:24   ACGUUAGUUUGAUAGGUCUCGUAA   1   |||||||||||||||||||*|||* targets:22   UGCAAUCAAACUAUCCAGAACAUC   45 Target Full Sequence	2.5	Sequence 1102 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235107.1	ncRNA:24   ACGUUAGUUUGAUAGGUCUCGUAA   1   |||||||||||||||||||*|||* targets:22   UGCAAUCAAACUAUCCAGAACAUC   45 Target Full Sequence	2.5	Sequence 1102 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235230.1	ncRNA:24   ACGUUAGUUUGAUAGGUCUCGUAA   1   |||||||||||||||||||*|||* targets:22   UGCAAUCAAACUAUCCAGAACAUC   45 Target Full Sequence	2.5	Sequence 1225 from Patent EP2985353	NA	coding protein	psRNATarget
JB163561.1	ncRNA:24   ACGUUAGUUUGAUAGGUCUCGUAA   1   |||||||||||||||||||*|||* targets:22   UGCAAUCAAACUAUCCAGAACAUC   45 Target Full Sequence	2.5	Sequence 1225 from Patent EP2559767	NA	coding protein	psRNATarget
HI403100.1	ncRNA:24   ACGUUAGUUUGAUAGGUCUCGUAA   1   |||||||||||||||||||*|||* targets:22   UGCAAUCAAACUAUCCAGAACAUC   45 Target Full Sequence	2.5	Sequence 1225 from Patent EP2074227	NA	coding protein	psRNATarget
HI402977.1	ncRNA:24   ACGUUAGUUUGAUAGGUCUCGUAA   1   |||||||||||||||||||*|||* targets:22   UGCAAUCAAACUAUCCAGAACAUC   45 Target Full Sequence	2.5	Sequence 1102 from Patent EP2074227	NA	coding protein	psRNATarget
HI403291.1	ncRNA:24   ACGUUAGUUUGAUAGGUCUCGUAA   1   |||||||||||*|||||||||||* targets:36   UGCAAUCAAACCAUCCAGAGCAUC   59 Target Full Sequence	2.5	Sequence 1416 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235421.1	ncRNA:24   ACGUUAGUUUGAUAGGUCUCGUAA   1   |||||||||||*|||||||||||* targets:36   UGCAAUCAAACCAUCCAGAGCAUC   59 Target Full Sequence	2.5	Sequence 1416 from Patent EP2985353	NA	coding protein	psRNATarget
JB163752.1	ncRNA:24   ACGUUAGUUUGAUAGGUCUCGUAA   1   |||||||||||*|||||||||||* targets:36   UGCAAUCAAACCAUCCAGAGCAUC   59 Target Full Sequence	2.5	Sequence 1416 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008676189.2	ncRNA:24   ACGUUAGUUUGAUAGGUCUCGUAA   1   |*|||||||||||||||||||||* targets:849   UACAAUCAAACUAUCCAGAGCAUC   872 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103650617 (LOC103650617), mRNA	NA	coding protein	psRNATarget
XM_020538318.1	ncRNA:24   ACGUUAGUUUGAUAGGUCUCGUAA   1   |*|||||||||||||||||||||* targets:36   UACAAUCAAACUAUCCAGAGCAUC   59 Target Full Sequence	1.0	PREDICTED: Zea mays zinc finger CCCH domain-containing protein 45 (LOC103626282), mRNA	NA	coding protein	psRNATarget