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BaseInfo

ncRNA ID	novel_zma_miR792
Species	Zea mays
Class	miRNA
Genome position	Chr2:190611226-190611359 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089711;SRR2089715
Length	24
Mature sequence(if miRNA)	1 - AAGGACUGAUUUGGUGAUCAGGGA - 24
Stem-loop(if miRNA)	--A  G                      CU         C                   UU     A    AG ACUGAUUUGGUGAUCAGGGAUU  GAGGGGAUC AUGGGGAGGAAUUCUUUUG  AUUUA A    || ||||||||||||||||||||||  ||||||||| |||||||||||||||||||  |||||    UC UGACUAAACCACUAGUCCCUAG  UUCUCUUAG UACCCUUCUUUAGGGGAAU  UAAGU A CAA  G                      AG         A                   GU     U
Stem-loop sequence	AAGGACUGAUUUGGUGAUCAGGGAUUCUGAGGGGAUCCAUGGGGAGGAAUUCUUUUGUUAUUUAAAAUUGAAUUGUAAGGGGAUUUCUUCCCAUAGAUUCUCUUGAGAUCCCUGAUCACCAAAUCAGUGCUAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020538171.1	ncRNA:24   AGGGACUAGUGGUUUAGUCAGGAA   1   |||||||||||||||||||*|||| targets:2   UCCCUGAUCACCAAAUCAGACCUU   25 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109939824 (LOC109939824), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008681394.2	ncRNA:24   AGGGACUAGUGGUUUAGUCAGGAA   1   |||||*|||||||||||||||||| targets:4511   UCCCUAAUCACCAAAUCAGUCCUU   4534 Target Full Sequence	1.0	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008681392.2	ncRNA:24   AGGGACUAGUGGUUUAGUCAGGAA   1   |||||*|||||||||||||||||| targets:4685   UCCCUAAUCACCAAAUCAGUCCUU   4708 Target Full Sequence	1.0	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552825.1	ncRNA:24   AGGGACUAGUGGUUUAGUCAGGAA   1   |||||*|||||||||||||||||| targets:4776   UCCCUAAUCACCAAAUCAGUCCUU   4799 Target Full Sequence	1.0	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X2, mRNA	NA	coding protein	psRNATarget
JB163906.1	ncRNA:24   AGGGACUAGUGGUUUAGUCAGGAA   1   ||||||=||||||||||||*|||| targets:62   UCCCUGGUCACCAAAUCAGCCCUU   85 Target Full Sequence	2.5	Sequence 1570 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235575.1	ncRNA:24   AGGGACUAGUGGUUUAGUCAGGAA   1   ||||||=||||||||||||*|||| targets:62   UCCCUGGUCACCAAAUCAGCCCUU   85 Target Full Sequence	2.5	Sequence 1570 from Patent EP2985353	NA	coding protein	psRNATarget
HI403445.1	ncRNA:24   AGGGACUAGUGGUUUAGUCAGGAA   1   ||||||=||||||||||||*|||| targets:62   UCCCUGGUCACCAAAUCAGCCCUU   85 Target Full Sequence	2.5	Sequence 1570 from Patent EP2074227	NA	coding protein	psRNATarget
EZ056613.1	ncRNA:24   AGGGACUAGUGGUUUAGUCAGGAA   1   ||||*|=||||||||||||||||| targets:160   UCCCCGGUCACCAAAUCAGUCCUU   183 Target Full Sequence	1.0	TSA: Zea mays contig57735, mRNA sequence	NA	coding protein	psRNATarget
NM_001196706.1	ncRNA:24   AGGGACUAGUGGUUUAGUCAGGAA   1   ||||*|=||||||||||||||||| targets:867   UCCCCGGUCACCAAAUCAGUCCUU   890 Target Full Sequence	1.0	Zea mays hypothetical protein (LOC100502229), mRNA	NA	coding protein	psRNATarget
BT087480.1	ncRNA:24   AGGGACUAGUGGUUUAGUCAGGAA   1   ||||*|=||||||||||||||||| targets:867   UCCCCGGUCACCAAAUCAGUCCUU   890 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0089I03 mRNA, complete cds	NA	coding protein	psRNATarget
EU945757.1	ncRNA:24   AGGGACUAGUGGUUUAGUCAGGAA   1   |==|||=||||||||||||||||* targets:70   UUUCUGGUCACCAAAUCAGUCCUA   93 Target Full Sequence	2.0	Zea mays clone 284734 mRNA sequence	NA	coding protein	psRNATarget
BT018533.1	ncRNA:24   AGGGACUAGUGGUUUAGUCAGGAA   1   ||=|||||||=||||||||*|||| targets:1919   UCUCUGAUCAUCAAAUCAGCCCUU   1942 Target Full Sequence	2.5	Zea mays clone EL01N0434E06.d mRNA sequence	NA	coding protein	psRNATarget
AY108273.1	ncRNA:24   AGGGACUAGUGGUUUAGUCAGGAA   1   |||||**||||||||||||||||| targets:455   UCCCUAUUCACCAAAUCAGUCCUU   478 Target Full Sequence	2.0	Zea mays PCO108913 mRNA sequence	NA	coding protein	psRNATarget
XM_008680925.2	ncRNA:24   AGGG-----------ACUAGUGGUUUAGUCAGGAA   1   ||||-----------||=||||||||||||*|||| targets:1816   UCCCCUCCAAUUGCAUGGUCACCAAAUCAGCCCUU   1850 Target Full Sequence	2.5	PREDICTED: Zea mays 4-coumarate--CoA ligase-like 3 (LOC103654103), mRNA	NA	coding protein	psRNATarget
EU974244.1	ncRNA:24   AGGGACUAGUGGUUUAGUCAGGAA   1   ||*|*|=||||||||||||*|||| targets:491   UCACCGGUCACCAAAUCAGCCCUU   514 Target Full Sequence	2.5	Zea mays clone 443590 SAUR1 - auxin-responsive SAUR family member mRNA, complete cds	NA	coding protein	psRNATarget