Search result

BaseInfo

ncRNA ID	novel_zma_miR790
Species	Zea mays
Class	miRNA
Genome position	Chr2:187742574-187742673 [+]
Reference genome	RefGen_v4
Source	SRR2089709
Length	23
Mature sequence(if miRNA)	1 - UCAAUUUAUAUGGAUUGGAGGGG - 23
Stem-loop(if miRNA)	-UC               G      ---AUGA   AGAUUGAGAGAGAUUU    AAUUUAUAUGGAUUG AGGGGA       UAU                U    ||||||||||||||| ||||||       |||                A    UUAGGUAUACUUAAC UCUCCU       CUA                A GAA               -      AAUUCAA   AAGGUAGGUAUCAUUC
Stem-loop sequence	UCAAUUUAUAUGGAUUGGAGGGGAAUGAUAUAGAUUGAGAGAGAUUUUAACUUACUAUGGAUGGAAAUCAACUUAAUCCUCUCAAUUCAUAUGGAUUAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU972046.1	ncRNA:23   GGGGAGGUUAGGUAUAUUUAACU   1   ||||||=|||||||||=|||||| targets:789   CCCCUCUAAUCCAUAUGAAUUGA   811 Target Full Sequence	2.5	Zea mays clone 373861 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
AY110812.1	ncRNA:23   GGGGAGGUUAGGUAUAUUUAACU   1   =|||||||||||||||=|||||| targets:190   UCCCUCCAAUCCAUAUGAAUUGA   212 Target Full Sequence	1.5	Zea mays CL13054_1 mRNA sequence	NA	coding protein	psRNATarget
NM_001137061.1	ncRNA:23   GGGGAGGUUAGGUAU-AUUUAACU   1   |=|||||||||||||-|||||||| targets:97   CUCCUCCAAUCCAUACUAAAUUGA   120 Target Full Sequence	3.0	Zea mays lipid binding protein (LOC100191632), mRNA	NA	coding protein	psRNATarget
BT033780.1	ncRNA:23   GGGGAGGUUAGGUAU-AUUUAACU   1   |=|||||||||||||-|||||||| targets:97   CUCCUCCAAUCCAUACUAAAUUGA   120 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0124G06 mRNA, complete cds	NA	coding protein	psRNATarget
EU969652.1	ncRNA:23   GGGGAGGUUAGGUAU-AUUUAACU   1   |=|||||||||||||-|||||||| targets:69   CUCCUCCAAUCCAUACUAAAUUGA   92 Target Full Sequence	3.0	Zea mays clone 333572 lipid binding protein mRNA, complete cds	NA	coding protein	psRNATarget
EU965203.1	ncRNA:23   GGGGAGGUUAGGUAUAUUUAACU   1   |*|||||||||||||||=||||| targets:893   CACCUCCAAUCCAUAUAGAUUGA   915 Target Full Sequence	1.5	Zea mays clone 284456 threonine endopeptidase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156482.1	ncRNA:23   GGGGAGGUUAGGUAUAUUUAACU   1   |*|||||||||||||||=||||| targets:893   CACCUCCAAUCCAUAUAGAUUGA   915 Target Full Sequence	1.5	Zea mays threonine endopeptidase (LOC100283581), mRNA	NA	coding protein	psRNATarget
EZ084135.1	ncRNA:23   GGGGAGGUUAGGUAUAUUUAACU   1   |=|*|||||||||||||=||||| targets:37   CUCAUCCAAUCCAUAUAGAUUGA   59 Target Full Sequence	1.5	TSA: Zea mays contig19779, mRNA sequence	NA	coding protein	psRNATarget
XM_008672266.2	ncRNA:23   GGGGAGGUUAGGUAUAUUUAACU   1   |=|*|=|||||||||||=||||| targets:1204   CUCAUUCAAUCCAUAUAGAUUGA   1226 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008672265.2	ncRNA:23   GGGGAGGUUAGGUAUAUUUAACU   1   |=|*|=|||||||||||=||||| targets:952   CUCAUUCAAUCCAUAUAGAUUGA   974 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103647750), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654752.2	ncRNA:23   GGGGAGGUUAGGUAUAUUUAACU   1   |==|||||*||||||||=||||| targets:2381   CUUCUCCAUUCCAUAUAGAUUGA   2403 Target Full Sequence	2.5	PREDICTED: Zea mays putative cysteine-rich receptor-like protein kinase 35 (LOC103633070), mRNA	NA	coding protein	psRNATarget