Search result

BaseInfo

ncRNA ID	novel_zma_miR787
Species	Zea mays
Class	miRNA
Genome position	Chr2:182204622-182204695 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089712;SRR2089713;SRR2089699;SRR2089706
Length	24
Mature sequence(if miRNA)	1 - GCGGACUGUCCGGCCCACAGGCGC - 24
Stem-loop(if miRNA)	--      U         AC    G     U     G   GCGGAC GUCCGGCCC  AGGC CGGAC GUCCG A   |||||| |||||||||  |||| ||||| ||||| C   CGCCUG CAGGCCGGG  UCCG GCCUG CAGGC C UC      C         AC    -     C     G
Stem-loop sequence	GCGGACUGUCCGGCCCACAGGCGCGGACUGUCCGGACCGCGGACCGUCCGGCCUCAGGGCCGGACCGUCCGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU943239.1	ncRNA:24   CGCGGACACCCGGCCUGUCAGGCG   1   |||||||||||||||||=|||||| targets:334   GCGCCUGUGGGCCGGACGGUCCGC   357 Target Full Sequence	1.5	Zea mays clone 1589479 mRNA sequence	NA	coding protein	psRNATarget
EU974386.1	ncRNA:24   CGCGGACACCCGGCCUGUCAGGCG   1   |||||||||||||||||=|||||| targets:856   GCGCCUGUGGGCCGGACGGUCCGC   879 Target Full Sequence	1.5	Zea mays clone 447822 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT062568.1	ncRNA:24   CGCGGACACCCGGCCUGUCAGGCG   1   |||||||||||||||||=|||||| targets:1447   GCGCCUGUGGGCCGGACGGUCCGC   1470 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0315C08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174686.1	ncRNA:24   CGCGGACACCCGGCCUGUCAGGCG   1   |||||||||||||||||=|||||| targets:1447   GCGCCUGUGGGCCGGACGGUCCGC   1470 Target Full Sequence	1.5	Zea mays Cysteine-rich receptor-like protein kinase 10 (LOC100381909), mRNA	NA	coding protein	psRNATarget
XM_008679932.1	ncRNA:24   CGCGGACACCCGGCCUGUCAGGCG   1   |||||||||||||||||=|||||| targets:1839   GCGCCUGUGGGCCGGACGGUCCGC   1862 Target Full Sequence	1.5	PREDICTED: Zea mays long chain base biosynthesis protein 2a (LOC103652945), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552482.1	ncRNA:24   CGCGGACACCCGGCCUGUCAGGCG   1   |||||||||||||||||=|||||| targets:1875   GCGCCUGUGGGCCGGACGGUCCGC   1898 Target Full Sequence	1.5	PREDICTED: Zea mays long chain base biosynthesis protein 2a (LOC103652945), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001149438.1	ncRNA:24   CGCGGACACCCGGCCUGUCAGGCG   1   |||||||||||||||||=|||||| targets:1931   GCGCCUGUGGGCCGGACGGUCCGC   1954 Target Full Sequence	1.5	Zea mays uncharacterized LOC100275341 (LOC100275341), mRNA	NA	coding protein	psRNATarget
EU955374.1	ncRNA:24   CGCGGACACCCGGCCUGUCAGGCG   1   |||||||||||||||||=|||||| targets:1931   GCGCCUGUGGGCCGGACGGUCCGC   1954 Target Full Sequence	1.5	Zea mays clone 1529849 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008679933.2	ncRNA:24   CGCGGACACCCGGCCUGUCAGGCG   1   |||||||||||||||||=|||||| targets:3669   GCGCCUGUGGGCCGGACGGUCCGC   3692 Target Full Sequence	1.5	PREDICTED: Zea mays long chain base biosynthesis protein 2a (LOC103652945), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU949855.1	ncRNA:24   CGCGGACACCCGGCCUGUCAGGCG   1   |||||||||||||||||=|||||= targets:422   GCGCCUGUGGGCCGGACGGUCCGU   445 Target Full Sequence	2.5	Zea mays clone 449025 mRNA sequence	NA	coding protein	psRNATarget
XM_020539115.1	ncRNA:24   CGCGGACACCCGGCCUGUCAGGCG   1   |||||||*|||||||||=|||||| targets:2217   GCGCCUGGGGGCCGGACGGUCCGC   2240 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008650408.2	ncRNA:24   CGCGGACACCCGGCCUGUCAGGCG   1   *||=*||||||||||||=|||||= targets:1847   ACGUGUGUGGGCCGGACGGUCCGU   1870 Target Full Sequence	2.5	PREDICTED: Zea mays type I inositol polyphosphate 5-phosphatase 8 (LOC103629231), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020540194.1	ncRNA:24   CGCGGACACCCGGCCUGUCAGGCG   1   *||=*||||||||||||=|||||= targets:1872   ACGUGUGUGGGCCGGACGGUCCGU   1895 Target Full Sequence	2.5	PREDICTED: Zea mays type I inositol polyphosphate 5-phosphatase 8 (LOC103629231), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ061701.1	ncRNA:24   CGCGGACACCCGGCCUGUCAGGCG   1   **||||**|||||||||||||||| targets:212   CGGCCUCAGGGCCGGACAGUCCGC   235 Target Full Sequence	2.0	TSA: Zea mays contig62823, mRNA sequence	NA	coding protein	psRNATarget