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BaseInfo

ncRNA ID	osa-miR5523
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:18205674-18205757 [-]
Reference genome	MSU7
Source	miRBase
Length	22
Mature sequence(if miRNA)	11 - UGAGGAGGAACAUAUUUACUAG - 32
Stem-loop(if miRNA)	UACUAGAA   A         AA    C   -----A     UA         AAC AGUAAGUGU  UUCC CCU      AACAU  A         ||| |||||||||  |||| |||      |||||         UUG UCAUUUAUA  AAGG GGA      UUGUA  A CUGUUAUA   A         -C    A   GUACAG     UA
Stem-loop sequence	UACUAGAAAACAAGUAAGUGUAAUUCCCCCUAAACAUUAAAAUAUGUUGACAUGAGGAGGAACAUAUUUACUAGUUAUAUUGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK064588.1	ncRNA:22   GAUCAUUUAUACAAGGAGGAGU   1   |||||||||||||||||||||| targets:215   CUAGUAAAUAUGUUCCUCCUCA   236 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:002-112-G02, full insert sequence	NA	coding protein	psRNATarget
AK106081.1	ncRNA:22   GAUCAUUUAUACAAGGAGGAGU   1   |||||*||*||||||||||||= targets:1295   CUAGUCAACAUGUUCCUCCUCG   1316 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:001-207-A08, full insert sequence	NA	coding protein	psRNATarget
AK121733.1	ncRNA:22   GAUCAUUUAUACAAGGAGGAGU   1   |||||*||*||||||||||||= targets:1296   CUAGUCAACAUGUUCCUCCUCG   1317 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J033083C10, full insert sequence	NA	coding protein	psRNATarget
XM_015789232.1	ncRNA:22   GAUCAUUUAUACAAGGAGGAGU   1   |||||*||*||||||||||||= targets:1308   CUAGUCAACAUGUUCCUCCUCG   1329 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group cytochrome P450 709B2 (LOC4344024), mRNA	cytochrome P450 709B2(LOC4344024)	coding protein	psRNATarget
AB190913.1	ncRNA:22   GAUCAUUUAUACAAGGAGGAGU   1   |*=|*|||||||||||||||*| targets:280   CAGGAAAAUAUGUUCCUCCUGA   301 Target Full Sequence	2.5	Oryza sativa Japonica Group osysl3 mRNA for hypothetical protein, complete cds	NA	coding protein	psRNATarget
XM_015783509.1	ncRNA:22   GAUCAUUUAUACAAGGAGGAGU   1   |*=|*|||||||||||||||*| targets:295   CAGGAAAAUAUGUUCCUCCUGA   316 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable metal-nicotianamine transporter YSL3 (LOC4338223), transcript variant X2, mRNA	probable metal-nicotianamine transporter YSL3(LOC4338223)	coding protein	psRNATarget
XM_015783508.1	ncRNA:22   GAUCAUUUAUACAAGGAGGAGU   1   |*=|*|||||||||||||||*| targets:295   CAGGAAAAUAUGUUCCUCCUGA   316 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable metal-nicotianamine transporter YSL3 (LOC4338223), transcript variant X1, mRNA	probable metal-nicotianamine transporter YSL3(LOC4338223)	coding protein	psRNATarget

Reference

1	PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011).