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BaseInfo

ncRNA ID	novel_zma_miR777
Species	Zea mays
Class	miRNA
Genome position	Chr5:21327336-21327432 [+]
Reference genome	RefGen_v4
Source	SRR1583943;SRR2647221;SRR2647343;SRR2647385;SRR2647386;SRR2647389;SRR2647467;SRR1583942
Length	24
Mature sequence(if miRNA)	74 - AUAAUCUGGGCAUAUUAUAAUCCC - 97
Stem-loop(if miRNA)	--         C                        C          A   GAUUAUAAU UGCCCAGAUUAUAUAAUCUAACAA UUUUGAACUA C   ||||||||| |||||||||||||||||||||||| |||||||||| A   CUAAUAUUA ACGGGUCUAAUAUAUUAGGUUGUU AAAAUUUGAU C CC         U                        A          U
Stem-loop sequence	GAUUAUAAUCUGCCCAGAUUAUAUAAUCUAACAACUUUUGAACUAACACUUAGUUUAAAAAUUGUUGGAUUAUAUAAUCUGGGCAUAUUAUAAUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008682894.2	ncRNA:24   CCCUAAUAUUAUACGGGUCUAAUA   1   |*||||||||||||=||||||||| targets:4977   GAGAUUAUAAUAUGUCCAGAUUAU   5000 Target Full Sequence	1.5	PREDICTED: Zea mays transducin family protein / WD-40 repeat family protein (si618080f12(37)), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008661345.2	ncRNA:24   CCCUAAUAUUAUACGGGUCUAAUA   1   *||||||||||*|||||||||||| targets:3260   AGGAUUAUAAUCUGCCCAGAUUAU   3283 Target Full Sequence	1.5	PREDICTED: Zea mays ubiquitin carboxyl-terminal hydrolase 9-like (LOC103638427), mRNA	NA	coding protein	psRNATarget
BT084023.2	ncRNA:24   CCCUAAUAUUAUACGGGUCUAAUA   1   *||||||||||*|||||||||||| targets:426   CGGAUUAUAAUUUGCCCAGAUUAU   449 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0066F23 mRNA, complete cds	NA	coding protein	psRNATarget
EU945179.1	ncRNA:24   CCCUAAUAUUAUACGGGUCUAAUA   1   *||||||||||*|||||||||||| targets:849   AGGAUUAUAAUCUGCCCAGAUUAU   872 Target Full Sequence	1.5	Zea mays clone 243633 mRNA sequence	NA	coding protein	psRNATarget
AY104747.1	ncRNA:24   CCCUAAUAUUAUACGGGUCUAAUA   1   *||||||||||*|||||||||||| targets:902   AGGAUUAUAAUCUGCCCAGAUUAU   925 Target Full Sequence	1.5	Zea mays PCO066213 mRNA sequence	NA	coding protein	psRNATarget
EZ065605.1	ncRNA:24   CCCUAAUAUUAUACGGGUCUAAUA   1   *||||||||||*|||||||||||| targets:269   AGGAUUAUAAUCUGCCCAGAUUAU   292 Target Full Sequence	1.5	TSA: Zea mays contig01238, mRNA sequence	NA	coding protein	psRNATarget
LQ238906.1	ncRNA:23   CCUAAUAUUAUACGGGUCUAAUA   1   ||||||||||*|||||||||||| targets:1   GGAUUAUAAUCUGCCCAGAUUAU   23 Target Full Sequence	1.5	Sequence 4901 from Patent EP2985353	NA	coding protein	psRNATarget
JB167258.1	ncRNA:23   CCUAAUAUUAUACGGGUCUAAUA   1   ||||||||||*|||||||||||| targets:1   GGAUUAUAAUCUGCCCAGAUUAU   23 Target Full Sequence	1.5	Sequence 4922 from Patent EP2559767	NA	coding protein	psRNATarget
JB167237.1	ncRNA:23   CCUAAUAUUAUACGGGUCUAAUA   1   ||||||||||*|||||||||||| targets:1   GGAUUAUAAUCUGCCCAGAUUAU   23 Target Full Sequence	1.5	Sequence 4901 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238927.1	ncRNA:23   CCUAAUAUUAUACGGGUCUAAUA   1   ||||||||||*|||||||||||| targets:1   GGAUUAUAAUCUGCCCAGAUUAU   23 Target Full Sequence	1.5	Sequence 4922 from Patent EP2985353	NA	coding protein	psRNATarget
HI406776.1	ncRNA:23   CCUAAUAUUAUACGGGUCUAAUA   1   ||||||||||*|||||||||||| targets:1   GGAUUAUAAUCUGCCCAGAUUAU   23 Target Full Sequence	1.5	Sequence 4901 from Patent EP2074227	NA	coding protein	psRNATarget
HI406797.1	ncRNA:23   CCUAAUAUUAUACGGGUCUAAUA   1   ||||||||||*|||||||||||| targets:1   GGAUUAUAAUCUGCCCAGAUUAU   23 Target Full Sequence	1.5	Sequence 4922 from Patent EP2074227	NA	coding protein	psRNATarget