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BaseInfo

ncRNA ID	novel_zma_miR774
Species	Zea mays
Class	miRNA
Genome position	Chr1:85772537-85772636 [+]
Reference genome	RefGen_v4
Source	SRR2089709
Length	24
Mature sequence(if miRNA)	1 - AGGGCUGAUUUGGUGGAUAGGGAU - 24
Stem-loop(if miRNA)	--A                            C            AAGGAA    GGGCUGAUUUGGUGGAUAGGGAUCACGA GGGAUCCAUGGG      U    |||||||||||||||||||||||||||| ||||||||||||    CCCGACUAAACCACCUAUCCCUAGUGCU CCCUAGGUACCC      C AUC                            C            CUGUAC
Stem-loop sequence	AGGGCUGAUUUGGUGGAUAGGGAUCACGACGGGAUCCAUGGGAAGGAAUCCAUGUCCCCAUGGAUCCCCUCGUGAUCCCUAUCCACCAAAUCAGCCCCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY108273.1	ncRNA:24   UAGGGAUAGGUGGUUUAGUCGGGA   1   ||||||||=|||||||||||=||| targets:454   AUCCCUAUUCACCAAAUCAGUCCU   477 Target Full Sequence	2.5	Zea mays PCO108913 mRNA sequence	NA	coding protein	psRNATarget
BT066676.1	ncRNA:24   UAGGGAUAGGUGGUUUAGUCGGGA   1   |||||||*|||||||||||||||| targets:1339   AUCCCUAACCACCAAAUCAGCCCU   1362 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0044C22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175907.1	ncRNA:24   UAGGGAUAGGUGGUUUAGUCGGGA   1   |||||||*|||||||||||||||| targets:1339   AUCCCUAACCACCAAAUCAGCCCU   1362 Target Full Sequence	1.0	Zea mays CCAAT-HAP2 transcription factor (CA2P12), mRNA	NA	coding protein	psRNATarget
JB163906.1	ncRNA:24   UAGGGAUAGGUGGUUUAGUCGGGA   1   ||||||=*=||||||||||||||| targets:61   AUCCCUGGUCACCAAAUCAGCCCU   84 Target Full Sequence	3.0	Sequence 1570 from Patent EP2559767	NA	coding protein	psRNATarget
HI403445.1	ncRNA:24   UAGGGAUAGGUGGUUUAGUCGGGA   1   ||||||=*=||||||||||||||| targets:61   AUCCCUGGUCACCAAAUCAGCCCU   84 Target Full Sequence	3.0	Sequence 1570 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235575.1	ncRNA:24   UAGGGAUAGGUGGUUUAGUCGGGA   1   ||||||=*=||||||||||||||| targets:61   AUCCCUGGUCACCAAAUCAGCCCU   84 Target Full Sequence	3.0	Sequence 1570 from Patent EP2985353	NA	coding protein	psRNATarget
HI403301.1	ncRNA:24   UAGGGAUAGGUGGUUUAGUCGGGA   1   ||||||=*=||||||||||||||| targets:96   AUCCCUGGUCACCAAAUCAGCCCU   119 Target Full Sequence	3.0	Sequence 1426 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235431.1	ncRNA:24   UAGGGAUAGGUGGUUUAGUCGGGA   1   ||||||=*=||||||||||||||| targets:96   AUCCCUGGUCACCAAAUCAGCCCU   119 Target Full Sequence	3.0	Sequence 1426 from Patent EP2985353	NA	coding protein	psRNATarget
JB163762.1	ncRNA:24   UAGGGAUAGGUGGUUUAGUCGGGA   1   ||||||=*=||||||||||||||| targets:96   AUCCCUGGUCACCAAAUCAGCCCU   119 Target Full Sequence	3.0	Sequence 1426 from Patent EP2559767	NA	coding protein	psRNATarget
BT038234.1	ncRNA:24   UAGGGAUAGGUGGUUUAGUCGGGA   1   *|=|||||||||||||*||||||| targets:1109   UUUCCUAUCCACCAAACCAGCCCU   1132 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0220G01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001146901.1	ncRNA:24   UAGGGAUAGGUGGUUUAGUCGGGA   1   *|=|||||||||||||*||||||| targets:1234   UUUCCUAUCCACCAAACCAGCCCU   1257 Target Full Sequence	1.5	Zea mays UMP-CMP kinase 3 (LOC100272426), mRNA	NA	coding protein	psRNATarget
BT038688.1	ncRNA:24   UAGGGAUAGGUGGUUUAGUCGGGA   1   *|=|||||||||||||*||||||| targets:1234   UUUCCUAUCCACCAAACCAGCCCU   1257 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0309H03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020545246.1	ncRNA:24   UAGGGAUAGGUGGUUUAGUCGGGA   1   |||||||*=||||||||||||||* targets:152   AUCCCUAAUCACCAAAUCAGCCCG   175 Target Full Sequence	3.0	PREDICTED: Zea mays methyl binding domain113 (cl26423_1), transcript variant X7, mRNA	NA	coding protein	psRNATarget
BT060864.1	ncRNA:24   UAGGGAUAGGUGGUUUAGUCGGGA   1   *|=|||*|||||||||*||||||| targets:1479   UUUCCUCUCCACCAAACCAGCCCU   1502 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0062A14 mRNA, complete cds	NA	coding protein	psRNATarget