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BaseInfo

ncRNA ID	osa-miR1848
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:18131807-18131869 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - CCUCGCCGGCGCGCGCGUGCA - 31
Stem-loop(if miRNA)	-GC     CC    C    G      UG A CC   GGGCC  CUCG CGGC CGCGCG  C G ||   |||||  |||| |||| ||||||  | GG   CUCGG  GAGC GCCG GCGCGC  G G   AUC     -U    U    -      GU U
Stem-loop sequence	CCGCGGGCCCCCUCGCCGGCGCGCGCGUGCAGGUGUGCGCGCGGCCGUCGAGUGGCUCCUAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK111317.1	ncRNA:21   ACGUGCGCGCGCGGCCGCUCC   1   ||||||||||||||||||||| targets:587   UGCACGCGCGCGCCGGCGAGG   607 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:002-181-C10, full insert sequence	NA	coding protein	psRNATarget
XM_015779143.1	ncRNA:21   ACGUGCGCGCGCGGCCGCUCC   1   |||=||||||||=|||||||| targets:934   UGCGCGCGCGCGUCGGCGAGG   954 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable long-chain-alcohol O-fatty-acyltransferase 5 (LOC4336191), mRNA	probable long-chain-alcohol O-fatty-acyltransferase 5(LOC4336191)	coding protein	psRNATarget
XM_015795437.1	ncRNA:21   ACGUGCGCGCGCGGCCGCUCC   1   **||||||||||||||||=|| targets:207   GUCACGCGCGCGCCGGCGGGG   227 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4345464 (LOC4345464), mRNA	uncharacterized LOC4345464(LOC4345464)	coding protein	psRNATarget
AK105106.1	ncRNA:21   ACGUGCGCGCGCGGCCGCUCC   1   **||||||||||||||||=|| targets:191   GUCACGCGCGCGCCGGCGGGG   211 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-100-E10, full insert sequence	NA	coding protein	psRNATarget
XM_015762673.1	ncRNA:21   ACGUGCGCGCGCGGCCGCUCC   1   *|=|||||||||*|||||||| targets:1518   GGUACGCGCGCGGCGGCGAGG   1538 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group disease resistance protein RPP13 (LOC4351984), mRNA	disease resistance protein RPP13(LOC4351984)	coding protein	psRNATarget
AK289025.1	ncRNA:21   ACGUGCGCGCGCGGCCGCUCC   1   *|=|||||||||*|||||||| targets:1480   GGUACGCGCGCGGCGGCGAGG   1500 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090090I18, full insert sequence	NA	coding protein	psRNATarget
AK072326.1	ncRNA:21   ACGUGCGCGCGCGGCCGCUCC   1   *|=|||||||||*|||||||| targets:1483   GGUACGCGCGCGGCGGCGAGG   1503 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023026M23, full insert sequence	NA	coding protein	psRNATarget
XM_015787647.1	ncRNA:21   ACGUGCGCGCGCGGCCGCUCC   1   *|||||*|||||=|||||||| targets:2355   AGCACGGGCGCGUCGGCGAGG   2375 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase At4g37250 (LOC4341615), mRNA	probable LRR receptor-like serine/threonine-protein kinase At4g37250(LOC4341615)	coding protein	psRNATarget
XM_015757919.1	ncRNA:21   ACG-UGCGCGCGCGGCCGCUCC   1   *||-|||||||||||||||||* targets:511   GGCGACGCGCGCGCCGGCGAGA   532 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group GDSL esterase/lipase EXL3 (LOC4348715), mRNA	GDSL esterase/lipase EXL3(LOC4348715)	coding protein	psRNATarget
AK065583.1	ncRNA:21   ACG-UGCGCGCGCGGCCGCUCC   1   *||-|||||||||||||||||* targets:513   GGCGACGCGCGCGCCGGCGAGA   534 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013034G20, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:18687877 "A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains"; Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C; Genome Res. 18:1456-1465(2008).