| ncRNA ID | osa-miR5487 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr4:17569162-17569381 [+] |
| Reference genome | MSU7 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 11 - AAAGAUGUGCAUGUAGUUCCG - 31 |
| Stem-loop(if miRNA) |
AG UAAA A - U C -- -----AA G --- - GUGUUAUGACAAGCUGGUUGGAGUACUCGUAUUUGAUGAACAUCCUCAUUUUAA AACAGC AG UGUG CAUGUAGU C GGCU UAAUU GC A GU UUG A |||||| || |||| |||||||| | |||| ||||| || | || ||| A UUGUCG UC ACAC GUACGUUA G CCGG AUUAA AC C CU UCG U GG -CCA - U U U UA AAUUCAU - CUU C UAUACGUAUCGGUACUACGGUAGAUGAGUUAUAAAGUGAGAAGGUUAGUAAUUU |
| Stem-loop sequence | AGAACAGCUAAAAGAUGUGCAUGUAGUUCCGGCUUAAUUAAGCGAGUUUGGUGUUAUGACAAGCUGGUUGGAGUACUCGUAUUUGAUGAACAUCCUCAUUUUAAAAUUUUAAUGAUUGGAAGAGUGAAAUAUUGAGUAGAUGGCAUCAUGGCUAUGCAUAUGCUCUCUUCCCAUACUUAAAAUUAAUGGCCUGUAUUGCAUGUCACACUACCGCUGUUGG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AK110698.1 |
|
2.5 | Oryza sativa Japonica Group cDNA clone:002-170-B05, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| XM_015759893.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group mannose-6-phosphate isomerase 1 (LOC4350861), mRNA | mannose-6-phosphate isomerase 1(LOC4350861) | coding protein | psRNATarget |
| 1 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |