Search result

BaseInfo

ncRNA ID	novel_zma_miR752
Species	Zea mays
Class	miRNA
Genome position	Chr1:24309263-24309331 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089706
Length	24
Mature sequence(if miRNA)	46 - AUAUGUGUUGAGGUGGAUUGAGGU - 69
Stem-loop(if miRNA)	A     --         G    A       A     UAUGU  GUUGAGGUG AUUG GGUAUAA UUAA  |||||  ||||||||| |||| ||||||| |||U  GUGCA  CAAUUUCAC UAAU CCAUAUU AAUU G     UG         A    C       G
Stem-loop sequence	AUAUGUGUUGAGGUGGAUUGAGGUAUAAAUUAAUUUAAGUUAUACCCUAAUACACUUUAACGUACGUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY110392.1	ncRNA:24   UGGAGUUAGGUGGAGUUGUGUAUA   1   *|||||||||||||||||||||=| targets:154   CCCUCAAUCCACCUCAACACAUGU   177 Target Full Sequence	1.5	Zea mays CL7038_2 mRNA sequence	NA	coding protein	psRNATarget
LQ235328.1	ncRNA:24   UG--GAGUUAGGUGGAGUUGUGUAUA   1   ||--||||||||||||||||||||=| targets:62   ACAACUCAAUCCACCUCAACACAUGU   87 Target Full Sequence	1.5	Sequence 1323 from Patent EP2985353	NA	coding protein	psRNATarget
HI403198.1	ncRNA:24   UG--GAGUUAGGUGGAGUUGUGUAUA   1   ||--||||||||||||||||||||=| targets:62   ACAACUCAAUCCACCUCAACACAUGU   87 Target Full Sequence	1.5	Sequence 1323 from Patent EP2074227	NA	coding protein	psRNATarget
JB163659.1	ncRNA:24   UG--GAGUUAGGUGGAGUUGUGUAUA   1   ||--||||||||||||||||||||=| targets:62   ACAACUCAAUCCACCUCAACACAUGU   87 Target Full Sequence	1.5	Sequence 1323 from Patent EP2559767	NA	coding protein	psRNATarget
HI403263.1	ncRNA:24   UGGAGUUAGGUGGAGUUGUGUAUA   1   |=|*|||||||||||||||||||| targets:64   AUCCCAAUCCACCUCAACACAUAU   87 Target Full Sequence	0.0	Sequence 1388 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235393.1	ncRNA:24   UGGAGUUAGGUGGAGUUGUGUAUA   1   |=|*|||||||||||||||||||| targets:64   AUCCCAAUCCACCUCAACACAUAU   87 Target Full Sequence	0.0	Sequence 1388 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235392.1	ncRNA:24   UGGAGUUAGGUGGAGUUGUGUAUA   1   |=|*|||||||||||||||||||| targets:64   AUCCCAAUCCACCUCAACACAUAU   87 Target Full Sequence	0.0	Sequence 1387 from Patent EP2985353	NA	coding protein	psRNATarget
JB163724.1	ncRNA:24   UGGAGUUAGGUGGAGUUGUGUAUA   1   |=|*|||||||||||||||||||| targets:64   AUCCCAAUCCACCUCAACACAUAU   87 Target Full Sequence	0.0	Sequence 1388 from Patent EP2559767	NA	coding protein	psRNATarget
HI403262.1	ncRNA:24   UGGAGUUAGGUGGAGUUGUGUAUA   1   |=|*|||||||||||||||||||| targets:64   AUCCCAAUCCACCUCAACACAUAU   87 Target Full Sequence	0.0	Sequence 1387 from Patent EP2074227	NA	coding protein	psRNATarget
JB163723.1	ncRNA:24   UGGAGUUAGGUGGAGUUGUGUAUA   1   |=|*|||||||||||||||||||| targets:64   AUCCCAAUCCACCUCAACACAUAU   87 Target Full Sequence	0.0	Sequence 1387 from Patent EP2559767	NA	coding protein	psRNATarget
HI403455.1	ncRNA:24   UGGAGUUAGGUGGAGUUGUGUAUA   1   ||*|=|||||||||||||||||=| targets:62   ACAUUAAUCCACCUCAACACAUGU   85 Target Full Sequence	1.5	Sequence 1580 from Patent EP2074227	NA	coding protein	psRNATarget
JB163916.1	ncRNA:24   UGGAGUUAGGUGGAGUUGUGUAUA   1   ||*|=|||||||||||||||||=| targets:62   ACAUUAAUCCACCUCAACACAUGU   85 Target Full Sequence	1.5	Sequence 1580 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235585.1	ncRNA:24   UGGAGUUAGGUGGAGUUGUGUAUA   1   ||*|=|||||||||||||||||=| targets:62   ACAUUAAUCCACCUCAACACAUGU   85 Target Full Sequence	1.5	Sequence 1580 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008672302.2	ncRNA:24   UGGAGUUAGGUGGAGUUGUGUAUA   1   |*|*|||||||||||||||||||| targets:2497   AACACAAUCCACCUCAACACAUAU   2520 Target Full Sequence	0.0	PREDICTED: Zea mays protein SHORT-ROOT 1 (LOC103647790), mRNA	NA	coding protein	psRNATarget
LQ235478.1	ncRNA:24   UGGAGUUAGGUGGAGUUGUGUAUA   1   ||=*=|||=|||||||||||||=| targets:64   ACUAUAAUUCACCUCAACACAUGU   87 Target Full Sequence	2.5	Sequence 1473 from Patent EP2985353	NA	coding protein	psRNATarget
JB163809.1	ncRNA:24   UGGAGUUAGGUGGAGUUGUGUAUA   1   ||=*=|||=|||||||||||||=| targets:64   ACUAUAAUUCACCUCAACACAUGU   87 Target Full Sequence	2.5	Sequence 1473 from Patent EP2559767	NA	coding protein	psRNATarget
HI403348.1	ncRNA:24   UGGAGUUAGGUGGAGUUGUGUAUA   1   ||=*=|||=|||||||||||||=| targets:64   ACUAUAAUUCACCUCAACACAUGU   87 Target Full Sequence	2.5	Sequence 1473 from Patent EP2074227	NA	coding protein	psRNATarget