Search result

BaseInfo

ncRNA ID novel_zma_miR747
Species Zea mays
Class miRNA
Genome position Chr1:41595035-41595232 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089714;SRR2089707;SRR2089708
Length 25
Mature sequence(if miRNA) 1 - AAGUUUCGAACUUGUCUUGUCUGUC - 25
Stem-loop(if miRNA) --                       A    A      A      G            U A      A          C   AAUAAC ACUAUCCUAUCUA
  CAGACAAGACAAGUUCGAAGCUU GAUG UGUCUA CGAUUG AAAAAUAAUGAU G AGAGAU AGGAAGACCA AAA      G             U
  ||||||||||||||||||||||| |||| |||||| |||||| |||||||||||| | |||||| |||||||||| |||      |             U
  GUCUGUUCUGUUCAAGCUUUGAA CUAC ACAGAU GCUAAC UUUUUAUUACUA C UCUCUA UCCUUCUGGU UUU      G             A
CU                       C    C      C      -            U C      C          A   ----AA UGGAUGCUAACAA
Stem-loop sequence CAGACAAGACAAGUUCGAAGCUUAGAUGAUGUCUAACGAUUGGAAAAAUAAUGAUUGAAGAGAUAAGGAAGACCACAAAAAUAACGACUAUCCUAUCUAUUAAACAAUCGUAGGUGAAUUUAUGGUCUUCCUCAUCUCUCCUAUCAUUAUUUUUCAAUCGCUAGACACCAUCCAAGUUUCGAACUUGUCUUGUCUGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008655993.2
ncRNA:25   CUGUCUGUUCUGUUCAAGCUUUGAA   1
  |||||||||||||||||||||=|||
targets:1759   GACAGACAAGACAAGUUCGAAGCUU   1783

1.5 PREDICTED: Zea mays beta-glucuronosyltransferase GlcAT14A (LOC103634466), transcript variant X1, mRNA NA coding protein psRNATarget