ncRNA ID | osa-miR5515 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr4:17244138-17244261 [+] |
Reference genome | MSU7 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 94 - CCGAUGGUUGUUCUACAGGUG - 114 |
Stem-loop(if miRNA) |
AA       GGU   G   GG   A      -  -   UAAU    AUGAGAGACUUCGGGAGUU   AUUGUUU   UCA UUG  GAG CGAUCA CG CCU    UGGA                   U   |||||||   ||| |||  ||| |||||| || |||    ||||   UAACAAA   AGU GAC  CUU GUUGGU GC GGG    AACC                   U UG       ---   G   AU   -      A  C   --UA    CACAGGUUUAUCUUAUUGA |
Stem-loop sequence | AAAUUGUUUGGUUCAGUUGGGGAGACGAUCACGCCUUAAUUGGAAUGAGAGACUUCGGGAGUUUUAGUUAUUCUAUUUGGACACCCAAAUGGGCCGAUGGUUGUUCUACAGGUGAAAACAAUGU |
1 | PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011). |