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BaseInfo

ncRNA ID osa-miR5515
Species Oryza sativa
Class miRNA
Genome position Chr4:17244138-17244261 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 94 - CCGAUGGUUGUUCUACAGGUG - 114
Stem-loop(if miRNA) AA       GGU   G   GG   A      -  -   UAAU    AUGAGAGACUUCGGGAGUU
  AUUGUUU   UCA UUG  GAG CGAUCA CG CCU    UGGA                   U
  |||||||   ||| |||  ||| |||||| || |||    ||||
  UAACAAA   AGU GAC  CUU GUUGGU GC GGG    AACC                   U
UG       ---   G   AU   -      A  C   --UA    CACAGGUUUAUCUUAUUGA
Stem-loop sequence AAAUUGUUUGGUUCAGUUGGGGAGACGAUCACGCCUUAAUUGGAAUGAGAGACUUCGGGAGUUUUAGUUAUUCUAUUUGGACACCCAAAUGGGCCGAUGGUUGUUCUACAGGUGAAAACAAUGU

Reference

1 PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa";
Wei LQ, Yan LF, Wang T;
Genome Biol. 12:R53(2011).