Search result

BaseInfo

ncRNA ID	novel_zma_miR730
Species	Zea mays
Class	miRNA
Genome position	Chr1:84335696-84335815 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089714;SRR2089715;SRR5451003;SRR5451004;SRR2089698;SRR2089701;SRR2089704;SRR2089705;SRR2089708
Length	24
Mature sequence(if miRNA)	97 - UGGCAAAAAAGGGACUAAAAGGGA - 120
Stem-loop(if miRNA)	--        A          AG    U                UC     UCCCUCUAA   UGGCAAAA AGGGACUAAA  GGAC AAAAACUAGAGACUAA  UUUAG         C   |||||||| ||||||||||  |||| ||||||||||||||||  |||||   ACCGUUUU UCUCUGAUUU  UCUG UUUUUGGUCUCUGAUU  GAAUC         C AA        A          GU    U                UC     CCCCACAAA
Stem-loop sequence	UGGCAAAAAAGGGACUAAAAGGGACUAAAAACUAGAGACUAAUCUUUAGUCCCUCUAACCAAACACCCCCUAAGCUUUAGUCUCUGGUUUUUUGUCUUGUUUAGUCUCUAUUUUGCCAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008660094.2	ncRNA:24   AGGGAAAAUCAGGGAAAAAACGGU   1   ||||*||||||||||||||||||| targets:702   UCCCAUUUAGUCCCUUUUUUGCCA   725 Target Full Sequence	0.0	PREDICTED: Zea mays MYB-related transcription factor (MYBR72), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001148657.1	ncRNA:24   AGGGAAAAUCAGGGAAAAAACGGU   1   ||||*||||||||||||||||||| targets:699   UCCCAUUUAGUCCCUUUUUUGCCA   722 Target Full Sequence	0.0	Zea mays MYB-related transcription factor (MYBR72), mRNA	NA	coding protein	psRNATarget
BT042708.1	ncRNA:24   AGGGAAAAUCAGGGAAAAAACGGU   1   ||||*||||||||||||||||||| targets:699   UCCCAUUUAGUCCCUUUUUUGCCA   722 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0017B12 mRNA, complete cds	NA	coding protein	psRNATarget
EU948299.1	ncRNA:24   AGGGAAAAUCAGGGAAAAAACGGU   1   ||||*||||||||||||||||||| targets:625   UCCCAUUUAGUCCCUUUUUUGCCA   648 Target Full Sequence	0.0	Zea mays clone 372547 mRNA sequence	NA	coding protein	psRNATarget
XM_008682726.2	ncRNA:24   AGGGAAAAUCAGGGAAAAAACGGU   1   ||==*|||||||=||||||||||| targets:680   UCUUGUUUAGUCUCUUUUUUGCCA   703 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100191216 (IDP141), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT054219.1	ncRNA:24   AGGGAAAAUCAGGGAAAAAACGGU   1   ||==*|||||||=||||||||||| targets:144   UCUUGUUUAGUCUCUUUUUUGCCA   167 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0176L07 mRNA, complete cds	NA	coding protein	psRNATarget