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BaseInfo

ncRNA ID novel_zma_miR729
Species Zea mays
Class miRNA
Genome position Chr1:84590922-84590979 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089710;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR5451005;SRR2089699;SRR2089700;SRR2089701;SRR2089702;SRR2089703;SRR2089706;SRR2089707;SRR2089708
Length 22
Mature sequence(if miRNA) 37 - UGAUCUCUACGUCGGAGGCGUC - 58
Stem-loop(if miRNA) --   U     -    G     G   -C  A
  UGA CUCUA CGUC GAGGC UCC  CA G
  ||| ||||| |||| ||||| |||  ||
  ACU GAGAU GCAG CUCCG AGG  GU C
GA   -     C    A     -   CA  U
Stem-loop sequence UGAUCUCUACGUCGGAGGCGUCCCCAAGCUUGACGGAGCCUCAGACGCUAGAGUCAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020538918.1
ncRNA:22   CUGCGGAGGCUGCAUCUCUAGU   1
  |||*||||||=|||||||||||
targets:720   GACUCCUCCGGCGUAGAGAUCA   741

2.5 PREDICTED: Zea mays uncharacterized LOC100280126 (LOC100280126), transcript variant X2, mRNA NA coding protein psRNATarget