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BaseInfo

ncRNA ID novel_zma_miR719
Species Zea mays
Class miRNA
Genome position Chr1:132404566-132404688 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089710;SRR2089701;SRR2089708
Length 24
Mature sequence(if miRNA) 1 - AGGGACUGCACUGCGUACAUCUGU - 24
Stem-loop(if miRNA) --         -    AUCA       G      -    C     UGCUC    U   -----   U
  GGGUGUGCG GGUG    AGUUUUU UGAGCG UACU GCGAC     GCUU GUC     UGG C
  ||||||||| ||||    ||||||| |||||| |||| |||||     |||| |||     |||
  UCUACAUGC UCAC    UCAGGGA GCUUGC GUGG UGCUG     CGAA UAG     ACC G
UG         G    ---G       -      C    C     CUCCU    C   UCGCA   A
Stem-loop sequence GGGUGUGCGGGUGAUCAAGUUUUUGUGAGCGUACUCGCGACUGCUCGCUUUGUCUGGUCGACCAACGCUGAUCAAGCUCCUCGUCGUCGGUGCCGUUCGAGGGACUGCACUGCGUACAUCUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ109992.1
ncRNA:24   UGUCUACAUGCGUCACGUCAGGGA   1
  =|||||||||||||||||||=||*
targets:97   GCAGAUGUACGCAGUGCAGUUCCA   120

2.5 TSA: Zea mays contig45652, mRNA sequence NA coding protein psRNATarget