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BaseInfo

ncRNA ID novel_zma_miR709
Species Zea mays
Class miRNA
Genome position Chr1:202267741-202267855 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR5451003;SRR5451004;SRR5451005;SRR2089706;SRR2089707;SRR2089708
Length 24
Mature sequence(if miRNA) 1 - CGAAAUCGGUAUCGGAAUCGGCGU - 24
Stem-loop(if miRNA) -G  --     A  A           --AAUUUUUCA    GAU  AUUGAUAACGGUAUU
  GU  AUUCC GA AUCGAUUUCGA           ACCG   UC               U
  ||  ||||| || |||||||||||           ||||   ||
  CG  UAAGG CU UGGCUAAAGCU           CUUU   UG               U
UG  GC     -  A           AUCUUUUAAAA    ---  GCUAAGGCAAAAGCU
Stem-loop sequence GGUAUUCCAGAAAUCGAUUUCGAAAUUUUUCAACCGGAUUCAUUGAUAACGGUAUUUUUCGAAAACGGAAUCGGUUUUCAAAAUUUUCUAUCGAAAUCGGUAUCGGAAUCGGCGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU940733.1
ncRNA:24   UGCGGCUAAGGCUAUGGCUAAAGC   1
  ==*||||||=|||||||||||*||
targets:167   GUACCGAUUUCGAUACCGAUUCCG   190

2.5 Zea mays clone 1061280 mRNA sequence NA coding protein psRNATarget