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BaseInfo

ncRNA ID novel_zma_miR700
Species Zea mays
Class miRNA
Genome position Chr1:235939693-235939813 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2287031;SRR2287159;SRR2287161;SRR2287162;SRR2287163;SRR2287164;SRR2287165;SRR1997865;SRR5451003;SRR5451004;SRR5451006;SRR1997866;SRR2089698;SRR2089699;SRR2089700;SRR2089701;SRR2089702;SRR2089703;SRR2089704;SRR2089705;SRR2089706;SRR2089707;SRR2089708
Length 21
Mature sequence(if miRNA) 101 - UUAGAUUAUAGUAGAAGAGUA - 121
Stem-loop(if miRNA) --UUA                   GAA A          C       CA          U
     GAUUAUAGUAGAAGAGUAG   G UAAAAUAUCA UUUGGUA  ACAAAUAAGC A
     |||||||||||||||||||   | |||||||||| |||||||  |||||||||| G
     CUAAUAUUAUCUUCUCAUU   C AUUUUAUAGU AAACCAU  UGUUUAUUCG C
UCAAC                   AUA A          A       AG          A
Stem-loop sequence UUAGAUUAUAGUAGAAGAGUAGGAAGAUAAAAUAUCACUUUGGUACAACAAAUAAGCUAGCAGCUUAUUUGUGAUACCAAAAUGAUAUUUUAACAUAUUACUCUUCUAUUAUAAUCCAACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ060610.1
ncRNA:21   AUGAGAAGAUGAUAUUAGAUU   1
  |*=||||=||||||||||||*
targets:98   UUUUCUUUUACUAUAAUCUAU   118

3.0 TSA: Zea mays contig61732, mRNA sequence NA coding protein psRNATarget
EU942660.1
ncRNA:21   AUGAGAAGAUGAUAUUAGAUU   1
  |*=||||=||||||||||||*
targets:184   UUUUCUUUUACUAUAAUCUAU   204

3.0 Zea mays clone 1528300 mRNA sequence NA coding protein psRNATarget