ncRNA ID | novel_zma_miR700 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr1:235939693-235939813 [-] |
Reference genome | RefGen_v4 |
Source | SRR2089709;SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2287031;SRR2287159;SRR2287161;SRR2287162;SRR2287163;SRR2287164;SRR2287165;SRR1997865;SRR5451003;SRR5451004;SRR5451006;SRR1997866;SRR2089698;SRR2089699;SRR2089700;SRR2089701;SRR2089702;SRR2089703;SRR2089704;SRR2089705;SRR2089706;SRR2089707;SRR2089708 |
Length | 21 |
Mature sequence(if miRNA) | 101 - UUAGAUUAUAGUAGAAGAGUA - 121 |
Stem-loop(if miRNA) |
--UUA                   GAA A          C       CA          U      GAUUAUAGUAGAAGAGUAG   G UAAAAUAUCA UUUGGUA  ACAAAUAAGC A      |||||||||||||||||||   | |||||||||| |||||||  |||||||||| G      CUAAUAUUAUCUUCUCAUU   C AUUUUAUAGU AAACCAU  UGUUUAUUCG C UCAAC                   AUA A          A       AG          A |
Stem-loop sequence | UUAGAUUAUAGUAGAAGAGUAGGAAGAUAAAAUAUCACUUUGGUACAACAAAUAAGCUAGCAGCUUAUUUGUGAUACCAAAAUGAUAUUUUAACAUAUUACUCUUCUAUUAUAAUCCAACU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
EZ060610.1 |
|
3.0 | TSA: Zea mays contig61732, mRNA sequence | NA | coding protein | psRNATarget | |||||||||
EU942660.1 |
|
3.0 | Zea mays clone 1528300 mRNA sequence | NA | coding protein | psRNATarget |