Search result

BaseInfo

ncRNA ID osa-miR529b
Species Oryza sativa
Class miRNA
Genome position Chr4:15883024-15883161 [+]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 19 - AGAAGAGAGAGAGUACAGCUU - 39
Stem-loop(if miRNA)          -     AU         A   A            ---GC  UU    UGUUAGAU    GAA  A
AUCGUGAAG GCUAA  GGAGAAGAG GAG GUACAGCUUUGG     GG  UAGU        GGUG   GU C
||||||||| |||||  ||||||||| ||| ||||||||||||     ||  ||||        ||||   ||
UAGUAUUUU CGAUU  CUUCUUCUC CUC CAUGUCGGAACC     UC  AUCA        CCGC   CG U
         U     CU         C   G            ACUUU  CC    -------U    -AG  U
Stem-loop sequence AUCGUGAAGGCUAAAUGGAGAAGAGAGAGAGUACAGCUUUGGGCGGUUUAGUUGUUAGAUGGUGGAAGUACUUGCGACGCCUACUACCCUUUUCACCAAGGCUGUACGCUCCCUCUUCUUCUCUUAGCUUUUUAUGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015795327.1
ncRNA:21   UUCGACAUGAGAGAGAGAAGA   1
  =||||||=|||||||||||||
targets:1100   GAGCUGUGCUCUCUCUCUUCU   1120

1.0 PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 14 (LOC4345998), mRNA squamosa promoter-binding-like protein 14(LOC4345998) coding protein psRNATarget
AK107191.1
ncRNA:21   UUCGACAUGAGAGAGAGAAGA   1
  =||||||=|||||||||||||
targets:987   GAGCUGUGCUCUCUCUCUUCU   1007

1.0 Oryza sativa Japonica Group cDNA clone:002-125-A04, full insert sequence NA coding protein psRNATarget
XM_015755475.1
ncRNA:21   UUCGACAUGAGAGAGAGAAGA   1
  *||||||=|||||||||||||
targets:1431   CAGCUGUGCUCUCUCUCUUCU   1451

1.0 PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 17 (LOC9266075), transcript variant X1, mRNA squamosa promoter-binding-like protein 17(LOC9266075) coding protein psRNATarget
XM_015755476.1
ncRNA:21   UUCGACAUGAGAGAGAGAAGA   1
  *||||||=|||||||||||||
targets:1428   CAGCUGUGCUCUCUCUCUUCU   1448

1.0 PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 17 (LOC9266075), transcript variant X2, mRNA squamosa promoter-binding-like protein 17(LOC9266075) coding protein psRNATarget
AK063561.1
ncRNA:21   UUCGACAUGAGAGAGAGAAGA   1
  *||||||=|||||||||||||
targets:670   CAGCUGUGCUCUCUCUCUUCU   690

1.0 Oryza sativa Japonica Group cDNA clone:001-117-F03, full insert sequence NA coding protein psRNATarget
JC611924.1
ncRNA:21   UUCGACAUGAGAGAGAGAAGA   1
  *||||||=|||||||||||||
targets:93   CAGCUGUGCUCUCUCUCUUCU   113

1.0 Sequence 86 from Patent WO2014106838 NA coding protein psRNATarget
AK068749.1
ncRNA:21   UUCGAC-AUGAGAGAGAGAAGA   1
  *=||||-|=|||||||||||||
targets:815   CGGCUGGUGCUCUCUCUCUUCU   836

3.0 Oryza sativa Japonica Group cDNA clone:J013158C23, full insert sequence NA coding protein psRNATarget
XM_015779858.1
ncRNA:21   UUCGAC-AUGAGAGAGAGAAGA   1
  *=||||-|=|||||||||||||
targets:812   CGGCUGGUGCUCUCUCUCUUCU   833

3.0 PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 7 (LOC4336597), mRNA squamosa promoter-binding-like protein 7(LOC4336597) coding protein psRNATarget
AK288382.1
ncRNA:21   UUCGAC-AUGAGAGAGAGAAGA   1
  *|||||-|*|||||||||||||
targets:333   CAGCUGCUCCUCUCUCUCUUCU   354

3.0 Oryza sativa Japonica Group cDNA, clone: J090026M23, full insert sequence NA coding protein psRNATarget
XM_015755387.1
ncRNA:21   UUCGACAUGAGAGAGAGAAGA   1
  *=*=|||=|||||||||||||
targets:1722   CGAUUGUGCUCUCUCUCUUCU   1742

3.0 PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 18 (LOC4347516), transcript variant X1, mRNA squamosa promoter-binding-like protein 18(LOC4347516) coding protein psRNATarget
XM_015755388.1
ncRNA:21   UUCGACAUGAGAGAGAGAAGA   1
  *=*=|||=|||||||||||||
targets:1704   CGAUUGUGCUCUCUCUCUUCU   1724

3.0 PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 18 (LOC4347516), transcript variant X2, mRNA squamosa promoter-binding-like protein 18(LOC4347516) coding protein psRNATarget
XM_015793891.1
ncRNA:21   UUCGACAUGAGAGAGAGAAGA   1
  *=*=|||=|||||||||||||
targets:1501   CGAUUGUGCUCUCUCUCUUCU   1521

3.0 PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 16 (LOC4346133), mRNA squamosa promoter-binding-like protein 16(LOC4346133) coding protein psRNATarget
AK109469.1
ncRNA:21   UUCGACAUGAGAGAGAGAAGA   1
  *=*=|||=|||||||||||||
targets:1049   CGAUUGUGCUCUCUCUCUUCU   1069

3.0 Oryza sativa Japonica Group cDNA clone:001-128-D02, full insert sequence NA coding protein psRNATarget
AK066414.1
ncRNA:21   UUCGACAUGAGAGAGAGAAGA   1
  *||||*|=||||||||||||*
targets:992   UAGCUUUGCUCUCUCUCUUCA   1012

3.0 Oryza sativa Japonica Group cDNA clone:J013067I11, full insert sequence NA coding protein psRNATarget
AK066003.1
ncRNA:21   UUCGACAUGAGAGAGAGAAGA   1
  *||||*|=||||||||||||*
targets:2000   UAGCUUUGCUCUCUCUCUUCA   2020

3.0 Oryza sativa Japonica Group cDNA clone:J013043E21, full insert sequence NA coding protein psRNATarget
XM_015781968.1
ncRNA:21   UUCGACAUGAGAGAGAGAAGA   1
  *||||||*||||||||||*||
targets:159   CAGCUGUCCUCUCUCUCUCCU   179

2.5 PREDICTED: Oryza sativa Japonica Group transcription factor bHLH68 (LOC4338155), mRNA transcription factor bHLH68(LOC4338155) coding protein psRNATarget
AK100786.1
ncRNA:21   UUCGACAUGAGAGAGAGAAGA   1
  *||||||*||||||||||*||
targets:80   CAGCUGUCCUCUCUCUCUCCU   100

2.5 Oryza sativa Japonica Group cDNA clone:J023120O21, full insert sequence NA coding protein psRNATarget

Reference

1 PMID:17635765
"MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development";
Lu S, Sun YH, Amerson H, Chiang VL;
Plant J. 51:1077-1098(2007).
2 PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains";
Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C;
Genome Res. 18:1456-1465(2008).
© 2017 OPP-ncRBASE. All rights reserved.