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BaseInfo

ncRNA ID osa-miR5511
Species Oryza sativa
Class miRNA
Genome position Chr4:14653011-14653138 [-]
Reference genome MSU7
Source miRBase
Length 21
Mature sequence(if miRNA) 11 - CAUAUCCCAGCUGUUUCGGCC - 31
Stem-loop(if miRNA) UUG UG AAG      -  GU U         -------------U    AUAACUUCCUAGCUGGCUGGC
   G  G   AAGGCC AA  G UUGGGAUGU              GGAA                     C
   |  |   |||||| ||  | |||||||||              ||||
   C  C   UUCCGG UU  U GACCCUAUA              CCGA                     U
UUA GU --G      C  UG C         CGUACCAAACUUUG    GAAACAGAUACUUUUAAAGAA
Stem-loop sequence UUGGUGGAAGAAGGCCAAGUGUUUGGGAUGUUGGAAAUAACUUCCUAGCUGGCUGGCCUAAGAAAUUUUCAUAGACAAAGAGCCGUUUCAAACCAUGCAUAUCCCAGCUGUUUCGGCCUUGCUGCAUU

Reference

1 PMID:21679406
"Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa";
Wei LQ, Yan LF, Wang T;
Genome Biol. 12:R53(2011).