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BaseInfo

ncRNA ID novel_zma_miR687
Species Zea mays
Class miRNA
Genome position Chr1:262833135-262833224 [-]
Reference genome RefGen_v4
Source SRR2089709;SRR2089711;SRR2089707
Length 24
Mature sequence(if miRNA) 67 - AACGGAUGGCACUCGGCAAAGAGG - 90
Stem-loop(if miRNA) --AAC                    GCU              CACA
     GGAUGGCACUCGGCAAAGAG   UCUUUGCCGAGUGU    C
     ||||||||||||||||||||   ||||||||||||||
     UCUACUGUGAGCUGUUUCUC   AGAAACGGCUCACG    A
AGAUC                    --A              AUCU
Stem-loop sequence AACGGAUGGCACUCGGCAAAGAGGCUUCUUUGCCGAGUGUCACACAUCUAGCACUCGGCAAAGAACUCUUUGUCGAGUGUCAUCUCUAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT067215.1
ncRNA:24   GGAGAAACGGCUCACGGUAGGCAA   1
  **|||||||||||||=||||||||
targets:1363   AGUCUUUGCCGAGUGUCAUCCGUU   1386

1.5 Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds NA coding protein psRNATarget
NM_001175109.1
ncRNA:24   GGAGAAACGGCUCACGGUAGGCAA   1
  **|||||||||||||=||||||||
targets:1500   AGUCUUUGCCGAGUGUCAUCCGUU   1523

1.5 Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA NA coding protein psRNATarget
BT064046.1
ncRNA:24   GGAGAAACGGCUCACGGUAGGCAA   1
  **|||||||||||||=||||||||
targets:1500   AGUCUUUGCCGAGUGUCAUCCGUU   1523

1.5 Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds NA coding protein psRNATarget