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BaseInfo

ncRNA ID	novel_zma_miR684
Species	Zea mays
Class	miRNA
Genome position	Chr1:278147623-278147725 [-]
Reference genome	RefGen_v4
Source	SRR2089709
Length	21
Mature sequence(if miRNA)	83 - UGGGAUUAUAAUCUGCCUAAA - 103
Stem-loop(if miRNA)	--            C  C   A      C     AA        A   UAA   UGGGAUUAUAAU UG CUA AUUAUA AAUCC  UUUAUUUU AAC   C   |||||||||||| || ||| |||||| |||||  |||||||| |||   A   ACCUUAAUAUUA AC GAU UAAUAU UUAGG  GAAUAAGA UUG   C AA            U  A   C      A     AC        G   CUU
Stem-loop sequence	UGGGAUUAUAAUCUGCCUAAAUUAUACAAUCCAAUUUAUUUUAAACUAACACUUCGUUGAGAAUAAGCAGGAUUAUAUAAUCUAGACAUAUUAUAAUUCCAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ089583.1	ncRNA:21   AAAUCCGUCUAAUAUUAGGGU   1   ||||||||||||||||||||| targets:15   UUUAGGCAGAUUAUAAUCCCA   35 Target Full Sequence	0.0	TSA: Zea mays contig25229, mRNA sequence	NA	coding protein	psRNATarget
BT055069.1	ncRNA:21   AAAUCCGUCUAAUAUUAGGGU   1   |||=||||||||||||||=|| targets:554   UUUGGGCAGAUUAUAAUCUCA   574 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
AY107155.1	ncRNA:21   AAAUCCGUCUAAUAUUAGGGU   1   |||=|||||||||||||=||| targets:618   UUUGGGCAGAUUAUAAUUCCA   638 Target Full Sequence	2.5	Zea mays PCO068737 mRNA sequence	NA	coding protein	psRNATarget
XM_020546835.1	ncRNA:21   AAAUCCGUCUAAUAUUAGGGU   1   |||||*||||||||||||||| targets:977   UUUAGCCAGAUUAUAAUCCCA   997 Target Full Sequence	1.0	PREDICTED: Zea mays WAT1-related protein At5g64700-like (LOC109943524), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008669523.2	ncRNA:21   AAAUCCGUCUAAUAUUAGGGU   1   |||||*||||||||||||||| targets:2176   UUUAGACAGAUUAUAAUCCCA   2196 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC100278420), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669523.2	ncRNA:21   AAAUCCGUCUAAUAUUAGGGU   1   |*|||*|||||||||||=||| targets:2119   UCUAGACAGAUUAUAAUUCCA   2139 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100278420), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU949179.1	ncRNA:21   AAAUCCGUCUAAUAUUAGGGU   1   |*||||=||||||||||||=| targets:81   UCUAGGUAGAUUAUAAUCCUA   101 Target Full Sequence	2.5	Zea mays clone 398195 mRNA sequence	NA	coding protein	psRNATarget
XM_008682894.2	ncRNA:21   AAAUCCGUCUAAUAUUAGGGU   1   |*|=|*||||||||||||||| targets:5056   UCUGGACAGAUUAUAAUCCCA   5076 Target Full Sequence	2.0	PREDICTED: Zea mays transducin family protein / WD-40 repeat family protein (si618080f12(37)), transcript variant X5, mRNA	NA	coding protein	psRNATarget
BT062324.1	ncRNA:21   AAAUCCGUCUAAUAUUAGGGU   1   |*|=|*||||||||||||||| targets:939   UCUGGUCAGAUUAUAAUCCCA   959 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0280F21 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235553.1	ncRNA:21   AAAUCCGUCUAAUAUUAGGGU   1   |*|=||||||||||*|||||| targets:124   UCUGGGCAGAUUAUUAUCCCA   144 Target Full Sequence	2.5	Sequence 1548 from Patent EP2985353	NA	coding protein	psRNATarget
JB163884.1	ncRNA:21   AAAUCCGUCUAAUAUUAGGGU   1   |*|=||||||||||*|||||| targets:124   UCUGGGCAGAUUAUUAUCCCA   144 Target Full Sequence	2.5	Sequence 1548 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235437.1	ncRNA:21   AAAUCCGUCUAAUAUUAGGGU   1   |*|=||||||||||*|||||| targets:124   UCUGGGCAGAUUAUUAUCCCA   144 Target Full Sequence	2.5	Sequence 1432 from Patent EP2985353	NA	coding protein	psRNATarget
HI403307.1	ncRNA:21   AAAUCCGUCUAAUAUUAGGGU   1   |*|=||||||||||*|||||| targets:124   UCUGGGCAGAUUAUUAUCCCA   144 Target Full Sequence	2.5	Sequence 1432 from Patent EP2074227	NA	coding protein	psRNATarget
HI403423.1	ncRNA:21   AAAUCCGUCUAAUAUUAGGGU   1   |*|=||||||||||*|||||| targets:124   UCUGGGCAGAUUAUUAUCCCA   144 Target Full Sequence	2.5	Sequence 1548 from Patent EP2074227	NA	coding protein	psRNATarget
JB163768.1	ncRNA:21   AAAUCCGUCUAAUAUUAGGGU   1   |*|=||||||||||*|||||| targets:124   UCUGGGCAGAUUAUUAUCCCA   144 Target Full Sequence	2.5	Sequence 1432 from Patent EP2559767	NA	coding protein	psRNATarget
BT053896.1	ncRNA:21   AAAUCCGUCUAAUAUUAGGGU   1   |*|||*||||||||||||*|| targets:1651   UCUAGACAGAUUAUAAUCACA   1671 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0019L09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152270.1	ncRNA:21   AAAUCCGUCUAAUAUUAGGGU   1   |*|||*||||||||||||*|| targets:1651   UCUAGACAGAUUAUAAUCACA   1671 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279249 (LOC100279249), mRNA	NA	coding protein	psRNATarget