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BaseInfo

ncRNA ID novel_zma_miR683
Species Zea mays
Class miRNA
Genome position Chr1:280974719-280974787 [-]
Reference genome RefGen_v4
Source SRR2089709
Length 24
Mature sequence(if miRNA) 46 - UGACUGUCGUAUGGUGCACCGGAA - 69
Stem-loop(if miRNA) --    U  C  A            -AA       G
  UGAC GU GU UGGUGCACCGGA   GUCCGGU C
  |||| || || ||||||||||||   |||||||
  ACUG CA CG ACCGCGUGGCCU   CAGGCCA A
CC    -  C  -            GUA       C
Stem-loop sequence UGACUGUCGUAUGGUGCACCGGAAAGUCCGGUGCACACCGGACAUGUCCGGUGCGCCAGCCACGUCACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT069634.1
ncRNA:24   AAGGCCACGUGGUAUGCUGUCAGU   1
  *||||*|||||||||||||||*||
targets:979   AUCCGAUGCACCAUACGACAGACA   1002

2.5 Zea mays full-length cDNA clone ZM_BFb0193J19 mRNA, complete cds NA coding protein psRNATarget
NM_001176828.1
ncRNA:24   AAGGCCACGUGGUAUGCUGUCAGU   1
  *||||*|||||||||||||||*||
targets:979   AUCCGAUGCACCAUACGACAGACA   1002

2.5 Zea mays uncharacterized LOC100384263 (LOC100384263), mRNA NA coding protein psRNATarget