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BaseInfo

ncRNA ID	novel_zma_miR679
Species	Zea mays
Class	miRNA
Genome position	Chr1:297658112-297658243 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089712;SRR2287162;SRR5100248;SRR2089702;SRR2089706;SRR2089707
Length	24
Mature sequence(if miRNA)	1 - AGAGACGUUAGAUAUAAGAUGAGU - 24
Stem-loop(if miRNA)	--C       G              ------U    C -   UAAUCUAUAAAUAACACCUUCUACCAUU    UAUUUUA AUCUAACGUCUCUG       UGAC A UUG                            A    ||||||| ||||||||||||||       |||| | |||    GUAGAAU UAGAUUGCAGAGAU       CCAU A AAA                            C UGA       A              UAAUAAA    - U   ACGAUUUCUGUGGGACUGUACCACCUCA
Stem-loop sequence	CUAUUUUAGAUCUAACGUCUCUGUUGACCAUUGUAAUCUAUAAAUAACACCUUCUACCAUUACACUCCACCAUGUCAGGGUGUCUUUAGCAAAAUAUACCAAAUAAUUAGAGACGUUAGAUAUAAGAUGAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008664116.2	ncRNA:24   UGAGUAGAAUAUAGAUUGCAGAGA   1   |||=||||||*||||||||||||| targets:680   ACUUAUCUUAGAUCUAACGUCUCU   703 Target Full Sequence	1.0	PREDICTED: Zea mays 4-alpha-L-fucosyltransferase (a4Lea), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT087210.1	ncRNA:24   UGAGUAGAAUAUAGAUUGCAGAGA   1   ||||||=|||*||||||||||||| targets:342   ACUCAUUUUAGAUCUAACGUCUCU   365 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0076O09 mRNA, complete cds	NA	coding protein	psRNATarget
HI403383.1	ncRNA:24   UGAGUAGAAUAUAGAUUGCAGAGA   1   ||||||=|||*||||||||||||| targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39 Target Full Sequence	2.0	Sequence 1508 from Patent EP2074227	NA	coding protein	psRNATarget
JB163844.1	ncRNA:24   UGAGUAGAAUAUAGAUUGCAGAGA   1   ||||||=|||*||||||||||||| targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39 Target Full Sequence	2.0	Sequence 1508 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235513.1	ncRNA:24   UGAGUAGAAUAUAGAUUGCAGAGA   1   ||||||=|||*||||||||||||| targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39 Target Full Sequence	2.0	Sequence 1508 from Patent EP2985353	NA	coding protein	psRNATarget
JB163685.1	ncRNA:24   UGAGUAGAAUAUAGAUUGCAGAGA   1   ||||||=|||*||||||||||||| targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39 Target Full Sequence	2.0	Sequence 1349 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235354.1	ncRNA:24   UGAGUAGAAUAUAGAUUGCAGAGA   1   ||||||=|||*||||||||||||| targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39 Target Full Sequence	2.0	Sequence 1349 from Patent EP2985353	NA	coding protein	psRNATarget
HI403224.1	ncRNA:24   UGAGUAGAAUAUAGAUUGCAGAGA   1   ||||||=|||*||||||||||||| targets:16   ACUCAUUUUAGAUCUAACGUCUCU   39 Target Full Sequence	2.0	Sequence 1349 from Patent EP2074227	NA	coding protein	psRNATarget
HI403197.1	ncRNA:24   UGAGUAGAAUAUAGAUUGCAGAGA   1   |||=||=|||*||||||||||||| targets:16   ACUUAUUUUAAAUCUAACGUCUCU   39 Target Full Sequence	2.0	Sequence 1322 from Patent EP2074227	NA	coding protein	psRNATarget
JB163658.1	ncRNA:24   UGAGUAGAAUAUAGAUUGCAGAGA   1   |||=||=|||*||||||||||||| targets:16   ACUUAUUUUAAAUCUAACGUCUCU   39 Target Full Sequence	2.0	Sequence 1322 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235327.1	ncRNA:24   UGAGUAGAAUAUAGAUUGCAGAGA   1   |||=||=|||*||||||||||||| targets:16   ACUUAUUUUAAAUCUAACGUCUCU   39 Target Full Sequence	2.0	Sequence 1322 from Patent EP2985353	NA	coding protein	psRNATarget
BT016456.1	ncRNA:24   UGAGUAGAAUAUAGAUUGCAGAGA   1   ||*|*|||||*|||||||||||=| targets:45   ACCCUUCUUAGAUCUAACGUCUUU   68 Target Full Sequence	2.5	Zea mays clone Contig289 mRNA sequence	NA	coding protein	psRNATarget