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BaseInfo

ncRNA ID	novel_zma_miR678
Species	Zea mays
Class	miRNA
Genome position	Chr1:298559811-298559894 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089715;SRR2287161;SRR2287162;SRR2287164;SRR2287165;SRR5451005;SRR2089699;SRR2089701;SRR2089703;SRR2089704;SRR2089706;SRR2089708
Length	21
Mature sequence(if miRNA)	64 - CGGAAGGGAUUGGAGAGGCUA - 84
Stem-loop(if miRNA)	--    A   A     GA           -    C       A   CGGA GGG UUGGA  GGCUAAAAUCC CUUC UUAUUCA U   |||| ||| |||||  ||||||||||| |||| |||||||   GUCU CCC AACCU  CCGAUUUUAGG GAAG AAUAAGU U UG    C   C     AC           A    -       U
Stem-loop sequence	CGGAAGGGAUUGGAGAGGCUAAAAUCCCUUCCUUAUUCAAUUUUGAAUAAGAAGAGGAUUUUAGCCCAUCCAACCCCCUCUGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020543912.1	ncRNA:21   AUCGGAGAGGUUAGGGAAGGC   1   |||||*|||||||||=||||| targets:4127   UAGCCCCUCCAAUCCUUUCCG   4147 Target Full Sequence	2.5	PREDICTED: Zea mays coronatine-insensitive protein homolog 2-like (LOC103638597), mRNA	NA	coding protein	psRNATarget
EZ066710.1	ncRNA:21   AUCGGAGAGGUUAGGGAAGGC   1   |*|==|||||||||||||||| targets:60   UUGUUUCUCCAAUCCCUUCCG   80 Target Full Sequence	2.0	TSA: Zea mays contig02344, mRNA sequence	NA	coding protein	psRNATarget
BT065189.1	ncRNA:21   AUCGGAGAGGUUAGGGAAGGC   1   |*|==|||||||||||||||| targets:933   UUGUUUCUCCAAUCCCUUCCG   953 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0026F18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156624.1	ncRNA:21   AUCGGAGAGGUUAGGGAAGGC   1   |*|==|||||||||||||||| targets:1054   UUGUUUCUCCAAUCCCUUCCG   1074 Target Full Sequence	2.0	Zea mays uncharacterized LOC100283725 (gpm911), mRNA	NA	coding protein	psRNATarget
EU965698.1	ncRNA:21   AUCGGAGAGGUUAGGGAAGGC   1   |*|==|||||||||||||||| targets:1054   UUGUUUCUCCAAUCCCUUCCG   1074 Target Full Sequence	2.0	Zea mays clone 288085 nuclear cap-binding protein subunit 2 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553374.1	ncRNA:21   AUCGGAGAGGUUAGGGAAGGC   1   |*|==|||||||||||||||| targets:1261   UUGUUUCUCCAAUCCCUUCCG   1281 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100283725 (gpm911), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ083462.1	ncRNA:21   AUCGGAGAGGUUAGGGAAGGC   1   *|*|||||||||||||||||* targets:21   AAUCCUCUCCAAUCCCUUCCA   41 Target Full Sequence	2.0	TSA: Zea mays contig19106, mRNA sequence	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:21   AUCGGAGAGGUUAGGGAAGGC   1   |||||*||||||||||*|||| targets:3500   UAGCCCCUCCAAUCCCCUCCG   3520 Target Full Sequence	2.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:21   AUCGGAGAGGUUAGGGAAGGC   1   |||||*||||||||||*|||| targets:3535   UAGCCCCUCCAAUCCCCUCCG   3555 Target Full Sequence	2.5	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
AY111588.1	ncRNA:21   AUCGGAGAGGUUAGGGAAGGC   1   *|*|||||||||||||||||* targets:303   AAUCCUCUCCAAUCCCUUCCA   323 Target Full Sequence	2.0	Zea mays CL28155_-2 mRNA sequence	NA	coding protein	psRNATarget
BT017648.1	ncRNA:21   AUCGGAGAGGUUAGGGAAGGC   1   *|||||||||||||||*|||* targets:167   AAGCCUCUCCAAUCCCCUCCU   187 Target Full Sequence	2.5	Zea mays clone EL01N0439D04.c mRNA sequence	NA	coding protein	psRNATarget
EU949791.1	ncRNA:21   AUCGGAGAGGUUAGGGAAGGC   1   |*||=*||||||||||||||| targets:274   UUGCUGCUCCAAUCCCUUCCG   294 Target Full Sequence	2.0	Zea mays clone 445585 mRNA sequence	NA	coding protein	psRNATarget
EU966941.1	ncRNA:21   AUCGGAGAGGUUAGGGAAGGC   1   *|*|||=|||||||||||||* targets:121   CAUCCUUUCCAAUCCCUUCCA   141 Target Full Sequence	3.0	Zea mays clone 298286 catalytic/ protein phosphatase type 2C/ protein serine/threonine phosphatase mRNA, complete cds	NA	coding protein	psRNATarget
BT036081.1	ncRNA:21   AUCGGAGAGGUUAGGGAAGGC   1   *|*|||=|||||||||||||* targets:121   CAUCCUUUCCAAUCCCUUCCA   141 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0094F13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138824.1	ncRNA:21   AUCGGAGAGGUUAGGGAAGGC   1   *|*|||=|||||||||||||* targets:121   CAUCCUUUCCAAUCCCUUCCA   141 Target Full Sequence	3.0	Zea mays putative protein phosphatase 2C family protein (LOC100193736), mRNA	NA	coding protein	psRNATarget