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BaseInfo

ncRNA ID	novel_zma_miR670
Species	Zea mays
Class	miRNA
Genome position	Chr10:145339791-145339912 [-]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089715;SRR2089698;SRR2089707
Length	24
Mature sequence(if miRNA)	99 - CGCGUAGCAGAAGGACAAGAGCAA - 122
Stem-loop(if miRNA)	--          -   G   AG    ---A  CC       -AG   U    --    CGG  UC   CGCGUAGCAG AAG ACA  AGCA    UG  GCGAGUA   AUU GAUA  UUUA   UC  C   |||||||||| ||| |||  ||||    ||  |||||||   ||| ||||  ||||   ||   GUGUAUUGUC UUC UGU  UUGU    AC  CGUUCGU   UAG CUGU  AGAU   AG  A UC          G   G   -A    CUUA  UU       GUA   U    UA    UUA  UU
Stem-loop sequence	CGCGUAGCAGAAGGACAAGAGCAAUGCCGCGAGUAAGAUUUGAUAUUUACGGUCUCCAUUGAAUUUAGAAUUGUCUGAUAUGUGCUUGCUUCAAUUCUGUUAUGUGCUUGCUGUUAUGUGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY112390.1	ncRNA:24   AACGAGAACAGGAAGACGAUGCGC   1   *||||||||||||||||||||||| targets:833   CUGCUCUUGUCCUUCUGCUACGCG   856 Target Full Sequence	0.0	Zea mays CL38157_1 mRNA sequence	NA	coding protein	psRNATarget
BT084913.1	ncRNA:24   AACGAGAACAGGAAGACGAUGCGC   1   *||||||*|||||||||||||||| targets:323   CUGCUCUCGUCCUUCUGCUACGCG   346 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0205K11 mRNA, complete cds	NA	coding protein	psRNATarget
EU967817.1	ncRNA:24   AACGAGAACAGGAAGACGAUGCGC   1   *||||||*|||||||||||||||| targets:461   CUGCUCUCGUCCUUCUGCUACGCG   484 Target Full Sequence	1.0	Zea mays clone 306354 mRNA sequence	NA	coding protein	psRNATarget
XM_020539427.1	ncRNA:24   AACGAGAACAGGAAGACGAUGCGC   1   *||||||*|||||||||||||||| targets:593   CUGCUCUCGUCCUUCUGCUACGCG   616 Target Full Sequence	1.0	PREDICTED: Zea mays cationic amino acid transporter 8, vacuolar (LOC103629848), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020539426.1	ncRNA:24   AACGAGAACAGGAAGACGAUGCGC   1   *||||||*|||||||||||||||| targets:593   CUGCUCUCGUCCUUCUGCUACGCG   616 Target Full Sequence	1.0	PREDICTED: Zea mays cationic amino acid transporter 8, vacuolar (LOC103629848), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008650941.2	ncRNA:24   AACGAGAACAGGAAGACGAUGCGC   1   *||||||*|||||||||||||||| targets:592   CUGCUCUCGUCCUUCUGCUACGCG   615 Target Full Sequence	1.0	PREDICTED: Zea mays cationic amino acid transporter 8, vacuolar (LOC103629848), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008650940.2	ncRNA:24   AACGAGAACAGGAAGACGAUGCGC   1   *||||||*|||||||||||||||| targets:593   CUGCUCUCGUCCUUCUGCUACGCG   616 Target Full Sequence	1.0	PREDICTED: Zea mays cationic amino acid transporter 8, vacuolar (LOC103629848), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EZ108355.1	ncRNA:24   AACGAGAACAGGAAGACGAUGCGC   1   |*||*|*|||||||||*||||||| targets:243   UGGCACGUGUCCUUCUCCUACGCG   266 Target Full Sequence	2.5	TSA: Zea mays contig44013, mRNA sequence	NA	coding protein	psRNATarget