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BaseInfo

ncRNA ID	osa-miR5818
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:13157348-13157406 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	2 - UCGAACUAGAAGGGCCAGGUU - 22
Stem-loop(if miRNA)	-AUC       -AA  -      --UU   U     GAACUAG   GG GCCAGG    GUA U     |||||||   || ||||||    |||     UUUGGUU   UC CGGUCC    CGU U UAUU       CCC  A      UCUU   G
Stem-loop sequence	AUCGAACUAGAAGGGCCAGGUUGUAUUUGUGCUUCUCCUGGCACUCCCUUGGUUUUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AM411441.1	ncRNA:21   UUGGACCGGGAAGAUCAAGCU   1   *=|||||*||||||=|||||| targets:188   CGCCUGGACCUUCUGGUUCGA   208 Target Full Sequence	2.5	Oryza sativa Japonica Group mRNA for putative eIF4E (eIF4E gene), cultivar Azucena	NA	coding protein	psRNATarget
AM411440.1	ncRNA:21   UUGGACCGGGAAGAUCAAGCU   1   *=|||||*||||||=|||||| targets:188   CGCCUGGACCUUCUGGUUCGA   208 Target Full Sequence	2.5	Oryza sativa Indica Group mRNA for putative eIF4E (eIF4E gene), cultivar IR64	NA	coding protein	psRNATarget
AK099169.1	ncRNA:21   UUGGACCGGGAAGAUCAAGCU   1   *=|||||*||||||=|||||| targets:229   CGCCUGGACCUUCUGGUUCGA   249 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023086O18, full insert sequence	NA	coding protein	psRNATarget
AK069207.1	ncRNA:21   UUGGACCGGGAAGAUCAAGCU   1   *=|||||*||||||=|||||| targets:229   CGCCUGGACCUUCUGGUUCGA   249 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023009L14, full insert sequence	NA	coding protein	psRNATarget
U34597.1	ncRNA:21   UUGGACCGGGAAGAUCAAGCU   1   *=|||||*||||||=|||||| targets:225   CGCCUGGACCUUCUGGUUCGA   245 Target Full Sequence	2.5	Oryza sativa cap-binding protein p26 mRNA, complete cds	NA	coding protein	psRNATarget
CT828625.1	ncRNA:21   UUGGACCGGGAAGAUCAAGCU   1   *=|||||*||||||=|||||| targets:227   CGCCUGGACCUUCUGGUUCGA   247 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA036E01, full insert sequence	NA	coding protein	psRNATarget
XM_015774155.1	ncRNA:21   UUGGACCGGGAAGAUCAAGCU   1   *=|||||*||||||=|||||| targets:262   CGCCUGGACCUUCUGGUUCGA   282 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group eukaryotic translation initiation factor 4E-1 (LOC4323837), mRNA	eukaryotic translation initiation factor 4E-1(LOC4323837)	coding protein	psRNATarget

Reference

1	PMID:22158467 "Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage"; Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ; Plant Cell. 23:4185-4207(2011).