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BaseInfo

ncRNA ID	novel_zma_miR668
Species	Zea mays
Class	miRNA
Genome position	Chr1:283954243-283954348 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089711
Length	24
Mature sequence(if miRNA)	83 - ACACGACUAAGGGUAUAAGUGAGC - 106
Stem-loop(if miRNA)	--           A   C           -GC   G          CCAG    A   UCACUUAUAUC UUA UUGUGUUUUUU   UUA UUUUGUCCUU    UGUU U   ||||||||||| ||| |||||||||||   ||| ||||||||||    ||||   AGUGAAUAUGG AAU AGCACAAAAAA   AGU AAAACAGGAA    ACAA A CG           G   C           ACA   G          ---A    G
Stem-loop sequence	UCACUUAUAUCAUUACUUGUGUUUUUUGCUUAGUUUUGUCCUUCCAGUGUUAUAGAACAAAAGGACAAAAGUGAACAAAAAAACACGACUAAGGGUAUAAGUGAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ076008.1	ncRNA:24   CGAGUGAAUAUGGGAAUCAGCACA   1   ||||||*||||||||||||||||| targets:39   GCUCACCUAUACCCUUAGUCGUGU   62 Target Full Sequence	1.0	TSA: Zea mays contig11645, mRNA sequence	NA	coding protein	psRNATarget
NM_001138790.2	ncRNA:24   CGAGUGAAUAUGGGAAUCAGCACA   1   |||||=*||||||||||||||||| targets:872   GCUCAUCUAUACCCUUAGUCGUGU   895 Target Full Sequence	2.0	Zea mays uncharacterized LOC100193698 (LOC100193698), mRNA	NA	coding protein	psRNATarget
BT036033.2	ncRNA:24   CGAGUGAAUAUGGGAAUCAGCACA   1   |||||=*||||||||||||||||| targets:872   GCUCAUCUAUACCCUUAGUCGUGU   895 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0092L19 mRNA, complete cds	NA	coding protein	psRNATarget
LQ239132.1	ncRNA:24   CGAGUGAAUAUGGGAAUCAGCACA   1   *||||=||*||||||||||||||| targets:2   CCUCAUUUUUACCCUUAGUCGUGU   25 Target Full Sequence	2.0	Sequence 5127 from Patent EP2985353	NA	coding protein	psRNATarget
JB167463.1	ncRNA:24   CGAGUGAAUAUGGGAAUCAGCACA   1   *||||=||*||||||||||||||| targets:2   CCUCAUUUUUACCCUUAGUCGUGU   25 Target Full Sequence	2.0	Sequence 5127 from Patent EP2559767	NA	coding protein	psRNATarget
HI407002.1	ncRNA:24   CGAGUGAAUAUGGGAAUCAGCACA   1   *||||=||*||||||||||||||| targets:2   CCUCAUUUUUACCCUUAGUCGUGU   25 Target Full Sequence	2.0	Sequence 5127 from Patent EP2074227	NA	coding protein	psRNATarget
BT088229.1	ncRNA:24   CGAGUGAAUAUGGGAAUCAGCACA   1   *||||=||*||||||||||||||| targets:1352   CCUCAUUUUUACCCUUAGUCGUGU   1375 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0083G18 mRNA, complete cds	NA	coding protein	psRNATarget
BT062332.1	ncRNA:24   CGAGUGAAUAUGGGAAUCAGCACA   1   *||||=||*||||||||||||||| targets:1670   CCUCAUUUUUACCCUUAGUCGUGU   1693 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0282G11 mRNA, complete cds	NA	coding protein	psRNATarget