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BaseInfo

ncRNA ID	novel_zma_miR665
Species	Zea mays
Class	miRNA
Genome position	Chr5:10444351-10444447 [+]
Reference genome	RefGen_v4
Source	SRR1583941;SRR1583942
Length	21
Mature sequence(if miRNA)	77 - AUCUGGAUAGAUUAUAAUCCC - 97
Stem-loop(if miRNA)	--            C                        UUG     A   GAUUAUAAUCUG CUAGAUUAUAUAAUCCAAUAAAUU   AACUA G   |||||||||||| ||||||||||||||||||||||||   ||||| U   CUAAUAUUAGAU GGUCUAAUAUAUUAGGUUAUUUAA   UUGAU G CC            A                        CAA     U
Stem-loop sequence	GAUUAUAAUCUGCCUAGAUUAUAUAAUCCAAUAAAUUUUGAACUAAGUGUUAGUUAACAAUUUAUUGGAUUAUAUAAUCUGGAUAGAUUAUAAUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001175758.1	ncRNA:21   CCCUAAUAUUAGAUAGGUCUA   1   |||||||||||||||=||||| targets:2338   GGGAUUAUAAUCUAUUCAGAU   2358 Target Full Sequence	1.5	Zea mays Transducin/WD40 repeat-like superfamily protein (LOC100383087), mRNA	NA	coding protein	psRNATarget
BT066158.1	ncRNA:21   CCCUAAUAUUAGAUAGGUCUA   1   |||||||||||||||=||||| targets:2338   GGGAUUAUAAUCUAUUCAGAU   2358 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0040P17 mRNA, complete cds	NA	coding protein	psRNATarget
AY106954.1	ncRNA:21   CCCUAAUAUUAGAUAGGUCUA   1   |||||||||||||||=||||| targets:1757   GGGAUUAUAAUCUAUUCAGAU   1777 Target Full Sequence	1.5	Zea mays PCO143990 mRNA sequence	NA	coding protein	psRNATarget
EU944194.1	ncRNA:21   CCCUAAUAUUAGAUAGGUCUA   1   |||||||||||||=||||||| targets:277   GGGAUUAUAAUCUGUCCAGAU   297 Target Full Sequence	1.5	Zea mays clone 1711585 mRNA sequence	NA	coding protein	psRNATarget
BT016291.1	ncRNA:21   CCCUAAUAUUAGAUAGGUCUA   1   |||||||||||||||=||||| targets:621   GGGAUUAUAAUCUAUUCAGAU   641 Target Full Sequence	1.5	Zea mays clone Contig124 mRNA sequence	NA	coding protein	psRNATarget
EU949078.1	ncRNA:21   CCCUAAUAUUAGAUAGGUCUA   1   |||||||||||||||=||||| targets:579   GGGAUUAUAAUCUAUUCAGAU   599 Target Full Sequence	1.5	Zea mays clone 395475 mRNA sequence	NA	coding protein	psRNATarget
EU948493.1	ncRNA:21   CCCUAAUAUUAGAUAGGUCUA   1   |||||||||||||=||||||| targets:251   GGGAUUAUAAUCUGUCCAGAU   271 Target Full Sequence	1.5	Zea mays clone 378933 mRNA sequence	NA	coding protein	psRNATarget
XM_020548752.1	ncRNA:21   CCCUAAUAUUAGAUAGGUCUA   1   ||||||||||||||*|||||| targets:27   GGGAUUAUAAUCUACCCAGAU   47 Target Full Sequence	1.5	PREDICTED: Zea mays putative disease resistance RPP13-like protein 1 (LOC109939242), mRNA	NA	coding protein	psRNATarget
HI407056.1	ncRNA:21   CCCUAAUAUUAGAUAGGUCUA   1   |*||||||||||||||||||| targets:9   GAGAUUAUAAUCUAUCCAGAU   29 Target Full Sequence	0.0	Sequence 5181 from Patent EP2074227	NA	coding protein	psRNATarget
JB167517.1	ncRNA:21   CCCUAAUAUUAGAUAGGUCUA   1   |*||||||||||||||||||| targets:9   GAGAUUAUAAUCUAUCCAGAU   29 Target Full Sequence	0.0	Sequence 5181 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239186.1	ncRNA:21   CCCUAAUAUUAGAUAGGUCUA   1   |*||||||||||||||||||| targets:9   GAGAUUAUAAUCUAUCCAGAU   29 Target Full Sequence	0.0	Sequence 5181 from Patent EP2985353	NA	coding protein	psRNATarget
EZ104714.1	ncRNA:21   CCCUAAUAUUAGAUAGGUCUA   1   ||||||||||||||*|||||| targets:42   GGGAUUAUAAUCUAGCCAGAU   62 Target Full Sequence	1.5	TSA: Zea mays contig40371, mRNA sequence	NA	coding protein	psRNATarget
EU945446.1	ncRNA:21   CCCUAAUAUUAGAUAGGUCUA   1   ||*||||||||||=||||||| targets:431   GGAAUUAUAAUCUGUCCAGAU   451 Target Full Sequence	2.5	Zea mays clone 273503 mRNA sequence	NA	coding protein	psRNATarget
HI403307.1	ncRNA:21   CCCUAAUAUUAGAUAGGUCUA   1   |*|||||||||||=||||||| targets:16   GAGAUUAUAAUCUGUCCAGAU   36 Target Full Sequence	1.5	Sequence 1432 from Patent EP2074227	NA	coding protein	psRNATarget
JB163884.1	ncRNA:21   CCCUAAUAUUAGAUAGGUCUA   1   |*|||||||||||=||||||| targets:16   GAGAUUAUAAUCUGUCCAGAU   36 Target Full Sequence	1.5	Sequence 1548 from Patent EP2559767	NA	coding protein	psRNATarget
HI403423.1	ncRNA:21   CCCUAAUAUUAGAUAGGUCUA   1   |*|||||||||||=||||||| targets:16   GAGAUUAUAAUCUGUCCAGAU   36 Target Full Sequence	1.5	Sequence 1548 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235437.1	ncRNA:21   CCCUAAUAUUAGAUAGGUCUA   1   |*|||||||||||=||||||| targets:16   GAGAUUAUAAUCUGUCCAGAU   36 Target Full Sequence	1.5	Sequence 1432 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235553.1	ncRNA:21   CCCUAAUAUUAGAUAGGUCUA   1   |*|||||||||||=||||||| targets:16   GAGAUUAUAAUCUGUCCAGAU   36 Target Full Sequence	1.5	Sequence 1548 from Patent EP2985353	NA	coding protein	psRNATarget
JB163768.1	ncRNA:21   CCCUAAUAUUAGAUAGGUCUA   1   |*|||||||||||=||||||| targets:16   GAGAUUAUAAUCUGUCCAGAU   36 Target Full Sequence	1.5	Sequence 1432 from Patent EP2559767	NA	coding protein	psRNATarget
EU976590.1	ncRNA:21   CCCUAAUAUUAGAUAGGUCUA   1   **|||||||||||*||||||| targets:1628   CAGAUUAUAAUCUCUCCAGAU   1648 Target Full Sequence	1.5	Zea mays clone 984325 mRNA sequence	NA	coding protein	psRNATarget
BT069856.2	ncRNA:21   CCCUAAUAUUAGAUAGGUCUA   1   **||||||||||||*|||||| targets:627   CAGAUUAUAAUCUACCCAGAU   647 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0305N24 mRNA, complete cds	NA	coding protein	psRNATarget