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BaseInfo

ncRNA ID	novel_zma_miR660
Species	Zea mays
Class	miRNA
Genome position	Chr1:252380351-252380502 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2287164;SRR2089699;SRR2089700;SRR2089701;SRR2089702;SRR2089703;SRR2089705;SRR2089707;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - AAGUUGGAUUAUGGUGGAAGGGUA - 24
Stem-loop(if miRNA)	--                G        -AA                     C         C            CCC   AAGUUGGAUUAUGGUG AAGGGUAG   GGUAAAAUAUCGCUUUGGAAU ACAAAUAAG UGAAAUAAGCUA   A   |||||||||||||||| ||||||||   ||||||||||||||||||||| ||||||||| ||||||||||||   UUCAACCUAAUACCAC UUCCCAUC   CCAUUUUAUAGUGAAACCUUG UGUUUAUUC AUUUUGUUCGAU   A UA                -        CUC                     U         A            CGU
Stem-loop sequence	AAGUUGGAUUAUGGUGGAAGGGUAGAAGGUAAAAUAUCGCUUUGGAAUCACAAAUAAGCUGAAAUAAGCUACCCAAUGCUAGCUUGUUUUAACUUAUUUGUUGUUCCAAAGUGAUAUUUUACCCUCCUACCCUUCACCAUAAUCCAACUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU975471.1	ncRNA:24   AUGGGAAGGUGGUAUUAGGUUGAA   1   |||=|||=|||||||||||||||| targets:804   UACUCUUUCACCAUAAUCCAACUU   827 Target Full Sequence	1.0	Zea mays clone 490696 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT036602.1	ncRNA:24   AUGGGAAGGUGGUAUUAGGUUGAA   1   |||||||*|||||||||||||||| targets:1071   UACCCUUACACCAUAAUCCAACUU   1094 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0125H01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139196.1	ncRNA:24   AUGGGAAGGUGGUAUUAGGUUGAA   1   |||||||*|||||||||||||||| targets:1071   UACCCUUACACCAUAAUCCAACUU   1094 Target Full Sequence	1.0	Zea mays OSJNBa0029H02.27-like protein (pco137821), mRNA	NA	coding protein	psRNATarget
XM_020541956.1	ncRNA:24   AUGGGAAGGUGGUAUUAGGUUGAA   1   ||=|=|||||==|||||||||||| targets:658   UAUCUUUCCAUUAUAAUCCAACUU   681 Target Full Sequence	2.5	PREDICTED: Zea mays U-box domain-containing protein 33-like (LOC109941340), mRNA	NA	coding protein	psRNATarget
NM_001152434.1	ncRNA:24   AUGGGAAGGUGGUAUUAGGUUGAA   1   ||||=|||||||||||*||||||| targets:1008   UACCUUUCCACCAUAACCCAACUU   1031 Target Full Sequence	1.5	Zea mays FIP1 (LOC100279424), mRNA	NA	coding protein	psRNATarget
BT054221.1	ncRNA:24   AUGGGAAGGUGGUAUUAGGUUGAA   1   ||||=|||||||||||*||||||| targets:1008   UACCUUUCCACCAUAACCCAACUU   1031 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0178P02 mRNA, complete cds	NA	coding protein	psRNATarget
EU956753.1	ncRNA:24   AUGGGAAGGUGGUAUUAGGUUGAA   1   ||*=|||=|||||||||=|||||| targets:2440   UAAUCUUUCACCAUAAUUCAACUU   2463 Target Full Sequence	2.5	Zea mays clone 1572652 cytochrome P450 CYP97A16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001319711.1	ncRNA:24   AUGGGAAGGUGGUAUUAGGUUGAA   1   ||*=|||=|||||||||=|||||| targets:2440   UAAUCUUUCACCAUAAUUCAACUU   2463 Target Full Sequence	2.5	Zea mays protein LUTEIN DEFICIENT 5, chloroplastic (LOC103627895), mRNA	NA	coding protein	psRNATarget
XM_008645727.2	ncRNA:24   AUGGGAAGGUGGUAUUAGGUUGAA   1   ||*|*||=||||||||||||=||| targets:3868   UAACAUUUCACCAUAAUCCAGCUU   3891 Target Full Sequence	2.5	PREDICTED: Zea mays Translocase of chloroplast 159 chloroplastic (LOC100381654), transcript variant X1, mRNA	NA	coding protein	psRNATarget