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BaseInfo

ncRNA ID	osa-miR5498
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:11830694-11830838 [-]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	115 - UGAGCUGUAACACUUGAAGAC - 135
Stem-loop(if miRNA)	-     GUGGU        AA     --G    CGCAACUU  -  UGCAUUGGCUCCUGUGACGACAAUGUUG  AACUG     UGAGCUGU  CACUU   AAGA        GC AC                            U  |||||     ||||||||  |||||   ||||        || ||                            U  UUGAC     GUUCGGUA  GUGAA   UUCU        CU CG                            G G     --AAU        CA     ACG    CUCACAAG  U  GUUUCGUAGUCGUCGGCGUUCCAGUUCA
Stem-loop sequence	AACUGGUGGUUGAGCUGUAACACUUGAAGACGCAACUUGCACUGCAUUGGCUCCUGUGACGACAAUGUUGUUGACUUGACCUUGCGGCUGCUGAUGCUUUGGCUUCGAACACUCUCUUGCAAAGUGACAUGGCUUGUAACAGUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK289093.1	ncRNA:21   CAGAAGUUCACAAUGUCGAGU   1   ||||||||||||||||*|||| targets:1327   GUCUUCAAGUGUUACAACUCA   1347 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090096C06, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011).