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BaseInfo

ncRNA ID novel_zma_miR659
Species Zea mays
Class miRNA
Genome position Chr1:249547435-249547539 [+]
Reference genome RefGen_v4
Source SRR2089709;SRR3341905;SRR1745812;SRR4237226;SRR4237227;SRR2089698;SRR2089699;SRR2089702;SRR2089703;SRR2089706;SRR2089707
Length 21
Mature sequence(if miRNA) 1 - UUGAGCCGCGUCAAUAUCUCC - 21
Stem-loop(if miRNA) UUGAGCC   --     A     CCUU   UGUCUC     UAC   CU  U  
       GCG  UCAAU UCUCC    GCU      GCAUC   UAG  AG GCC
       |||  ||||| |||||    |||      |||||   |||  || ||U
       CGC  AGUUG AGAGG    CGA      CGUAG   GUC  UC CGU
-CUAAUA   UU     A     UACU   --UCCC     CUA   UC  -  
Stem-loop sequence UUGAGCCGCGUCAAUAUCUCCCCUUGCUUGUCUCGCAUCUACUAGCUAGUGCCUUGCCUCUCUGAUCGAUGCCCCUAGCUCAUGGAGAAGUUGAUUCGCAUAAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU948879.1
ncRNA:21   CCUCUAUAACUGCGCCGAGUU   1
  *|||||||||=||||||||||
targets:601   CGAGAUAUUGGCGCGGCUCAA   621

1.5 Zea mays clone 388565 mRNA sequence NA coding protein psRNATarget
XM_020541749.1
ncRNA:21   CCUCUAUAACUGCGCCGAGUU   1
  *|||||||||=||||||||||
targets:357   CGAGAUAUUGGCGCGGCUCAA   377

1.5 PREDICTED: Zea mays scarecrow-like protein 6 (LOC103634376), mRNA NA coding protein psRNATarget
KJ726875.1
ncRNA:21   CCUCUAUAACUGCGCCGAGUU   1
  *|||||||||=||||||||||
targets:435   AGAGAUAUUGGCGCGGCUCAA   455

1.5 Zea mays clone pUT3416 GRAS transcription factor (GRAS31) mRNA, partial cds NA coding protein psRNATarget
JX428447.1
ncRNA:21   CCUCUAUAACUGCGCCGAGUU   1
  *|||||||||=||||||||||
targets:495   CGAGAUAUUGGCGCGGCUCAA   515

1.5 Zea mays subsp. mays clone pUT3041 GRAS32 GRAS type transcription factor mRNA, partial cds NA coding protein psRNATarget
EU974370.1
ncRNA:21   CCUCUAUAACUGCGCCGAGUU   1
  *|||||||||=||||||||||
targets:495   CGAGAUAUUGGCGCGGCUCAA   515

1.5 Zea mays clone 447391 scarecrow-like 6 mRNA, complete cds NA coding protein psRNATarget
NM_001147253.1
ncRNA:21   CCUCUAUAACUGCGCCGAGUU   1
  *|||||||||=||||||||||
targets:551   CGAGAUAUUGGCGCGGCUCAA   571

1.5 Zea mays scarecrow-like 6 (LOC100272800), mRNA NA coding protein psRNATarget
BT039466.1
ncRNA:21   CCUCUAUAACUGCGCCGAGUU   1
  *|||||||||=||||||||||
targets:551   CGAGAUAUUGGCGCGGCUCAA   571

1.5 Zea mays full-length cDNA clone ZM_BFc0014N06 mRNA, complete cds NA coding protein psRNATarget
KJ727757.1
ncRNA:21   CCUCUAUAACUGCGCCGAGUU   1
  *|||||||||=||||||||||
targets:903   CGAGAUAUUGGCGCGGCUCAA   923

1.5 Zea mays clone pUT5701 GRAS transcription factor (GRAS33) mRNA, partial cds NA coding protein psRNATarget
BT069447.1
ncRNA:21   CCUCUAUAACUGCGCCGAGUU   1
  *|||||||||=||||||||||
targets:504   AGAGAUAUUGGCGCGGCUCAA   524

1.5 Zea mays full-length cDNA clone ZM_BFb0134J07 mRNA, complete cds NA coding protein psRNATarget
KJ727939.1
ncRNA:21   CCUCUAUAACUGCGCCGAGUU   1
  *|||||||||=||||||||||
targets:1104   AGAGAUAUUGGCGCGGCUCAA   1124

1.5 Zea mays clone pUT6034 GRAS transcription factor (GRAS80) mRNA, partial cds NA coding protein psRNATarget
KJ726956.1
ncRNA:21   CCUCUAUAACUGCGCCGAGUU   1
  *|||||||||=||||||||||
targets:1134   CGAGAUAUUGGCGCGGCUCAA   1154

1.5 Zea mays clone pUT3653 GRAS transcription factor (GRAS79) mRNA, partial cds NA coding protein psRNATarget
BT018771.1
ncRNA:21   CCUCUAUAACUGCGCCGAGUU   1
  *|||||||||=||||||||||
targets:805   CGAGAUAUUGGCGCGGCUCAA   825

1.5 Zea mays clone EL01N0525E08.d mRNA sequence NA coding protein psRNATarget
BT063504.1
ncRNA:21   CCUCUAUAACUGCGCCGAGUU   1
  *|||||||||=||||||||||
targets:1197   AGAGAUAUUGGCGCGGCUCAA   1217

1.5 Zea mays full-length cDNA clone ZM_BFc0070G06 mRNA, complete cds NA coding protein psRNATarget
NM_001148573.2
ncRNA:21   CCUCUAUAACUGCGCCGAGUU   1
  *|||||||||=||||||||||
targets:1162   CGAGAUAUUGGCGCGGCUCAA   1182

1.5 Zea mays Scarecrow-like protein 6 (LOC100274201), mRNA NA coding protein psRNATarget
BT053927.1
ncRNA:21   CCUCUAUAACUGCGCCGAGUU   1
  *|||||||||=||||||||||
targets:917   AGAGAUAUUGGCGCGGCUCAA   937

1.5 Zea mays full-length cDNA clone ZM_BFc0046K18 mRNA, complete cds NA coding protein psRNATarget
NM_001174511.1
ncRNA:21   CCUCUAUAACUGCGCCGAGUU   1
  *|||||||||=||||||||||
targets:1276   CGAGAUAUUGGCGCGGCUCAA   1296

1.5 Zea mays GRAS transcription factor (GRAS79), mRNA NA coding protein psRNATarget
BT062028.1
ncRNA:21   CCUCUAUAACUGCGCCGAGUU   1
  *|||||||||=||||||||||
targets:1276   CGAGAUAUUGGCGCGGCUCAA   1296

1.5 Zea mays full-length cDNA clone ZM_BFb0207H13 mRNA, complete cds NA coding protein psRNATarget
NM_001174946.1
ncRNA:21   CCUCUAUAACUGCGCCGAGUU   1
  *|||||||||=||||||||||
targets:1370   AGAGAUAUUGGCGCGGCUCAA   1390

1.5 Zea mays Scarecrow-like protein 6 (LOC100382187), mRNA NA coding protein psRNATarget
BT063450.1
ncRNA:21   CCUCUAUAACUGCGCCGAGUU   1
  *|||||||||=||||||||||
targets:1370   AGAGAUAUUGGCGCGGCUCAA   1390

1.5 Zea mays full-length cDNA clone ZM_BFc0064F13 mRNA, complete cds NA coding protein psRNATarget
XM_020552649.1
ncRNA:21   CCUCUAUAACUGCGCCGAGUU   1
  *|||||||||=||||||||||
targets:1378   AGAGAUAUUGGCGCGGCUCAA   1398

1.5 PREDICTED: Zea mays uncharacterized LOC100279263 (LOC100279263), mRNA NA coding protein psRNATarget
EU964974.1
ncRNA:21   CCUCUAUAACUGCGCCGAGUU   1
  *||||||*||=||||||||||
targets:813   CGAGAUACUGGCGCGGCUCAA   833

2.5 Zea mays clone 282885 mRNA sequence NA coding protein psRNATarget
XM_008651591.2
ncRNA:21   CCUCUAUAACUGCGCCGAGUU   1
  *||||||*||=||||||||||
targets:1015   CGAGAUACUGGCGCGGCUCAA   1035

2.5 PREDICTED: Zea mays scarecrow-like protein 6 (LOC103630535), mRNA NA coding protein psRNATarget
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