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BaseInfo

ncRNA ID	novel_zma_miR658
Species	Zea mays
Class	miRNA
Genome position	Chr1:245630964-245631037 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089715;SRR2287162;SRR2287163;SRR2287165;SRR5451003;SRR2089705
Length	22
Mature sequence(if miRNA)	1 - AAGGACAAGAUGAAGGAUGCGG - 22
Stem-loop(if miRNA)	-     C    -   AG    C     CCACAAAUGG  AAGGA AAGA UGA  GAUG GGUCU          A  ||||| |||| |||  |||| |||||          G  UUUCU UUCU ACU  UUAC CCUCG          A G     A    U   CU    -     AGAUUUGAAA
Stem-loop sequence	AAGGACAAGAUGAAGGAUGCGGUCUCCACAAAUGGAGAAAAGUUUAGAGCUCCCAUUUCUCAUUCUUAUCUUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU970163.1	ncRNA:22   GGCGUAGGAAGUAGAACAGGAA   1   ||||||||*|||||*||||||| targets:86   CCGCAUCCCUCAUCCUGUCCUU   107 Target Full Sequence	2.5	Zea mays clone 341246 mRNA sequence	NA	coding protein	psRNATarget
EU969097.1	ncRNA:22   GGCGUAGGAAGUAGAACAGGAA   1   ||||||||*|||||*||||||| targets:124   CCGCAUCCCUCAUCCUGUCCUU   145 Target Full Sequence	2.5	Zea mays clone 326044 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020553021.1	ncRNA:22   GGCGUAGGAAGUAGAACAGGAA   1   ||||||||*|||||*||||||| targets:118   CCGCAUCCCUCAUCCUGUCCUU   139 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100192003 (LOC100192003), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008682782.2	ncRNA:22   GGCGUAGGAAGUAGAACAGGAA   1   ||||||||*|||||*||||||| targets:118   CCGCAUCCCUCAUCCUGUCCUU   139 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100192003 (LOC100192003), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008682781.2	ncRNA:22   GGCGUAGGAAGUAGAACAGGAA   1   ||||||||*|||||*||||||| targets:118   CCGCAUCCCUCAUCCUGUCCUU   139 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100192003 (LOC100192003), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001137427.1	ncRNA:22   GGCGUAGGAAGUAGAACAGGAA   1   ||||||||*|||||*||||||| targets:58   CCGCAUCCCUCAUCCUGUCCUU   79 Target Full Sequence	2.5	Zea mays uncharacterized LOC100192003 (LOC100192003), mRNA	NA	coding protein	psRNATarget
BT034278.1	ncRNA:22   GGCGUAGGAAGUAGAACAGGAA   1   ||||||||*|||||*||||||| targets:58   CCGCAUCCCUCAUCCUGUCCUU   79 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0028C09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008664018.1	ncRNA:22   GGCGUAGGAAGUAGAACAGGAA   1   ==*|||||||||*||||||||* targets:239   UUACAUCCUUCAACUUGUCCUG   260 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100383930 (LOC100383930), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001176549.1	ncRNA:22   GGCGUAGGAAGUAGAACAGGAA   1   ==*|||||||||*||||||||* targets:312   UUACAUCCUUCAACUUGUCCUG   333 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383930 (LOC100383930), mRNA	NA	coding protein	psRNATarget
BT068655.1	ncRNA:22   GGCGUAGGAAGUAGAACAGGAA   1   ==*|||||||||*||||||||* targets:312   UUACAUCCUUCAACUUGUCCUG   333 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0360G20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020545192.1	ncRNA:22   GGCGUAGGAAGUAGAACAGGAA   1   ==*|||||||||*||||||||* targets:303   UUACAUCCUUCAACUUGUCCUG   324 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100383930 (LOC100383930), transcript variant X2, mRNA	NA	coding protein	psRNATarget