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BaseInfo

ncRNA ID	novel_zma_miR654
Species	Zea mays
Class	miRNA
Genome position	Chr4:159178621-159178690 [+]
Reference genome	RefGen_v4
Source	SRR1583943
Length	24
Mature sequence(if miRNA)	1 - GAUCCAUGGGGGAGAAAUCCUCUU - 24
Stem-loop(if miRNA)	--              A          CA     A   GAUCCAUGGGGGAG AAUCCUCUUG  AUUCA U   |||||||||||||| ||||||||||  |||||   CUAGGUACCCCCUC UUAGGGGAAC  UAAGU U CC              C          AA     U
Stem-loop sequence	GAUCCAUGGGGGAGAAAUCCUCUUGCAAUUCAAUUUUGAAUAACAAGGGGAUUCCUCCCCCAUGGAUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020545246.1	ncRNA:24   UUCUCCUAAAGAGGGGGUACCUAG   1   |||=|||||*|||||||||||||| targets:120   AAGGGGAUUCCUCCCCCAUGGAUC   143 Target Full Sequence	1.0	PREDICTED: Zea mays methyl binding domain113 (cl26423_1), transcript variant X7, mRNA	NA	coding protein	psRNATarget
JB169493.1	ncRNA:24   UUCUCCUAAAGAGGGGGUACCUAG   1   |||=|||||*|||||||||||||* targets:48   AAGGGGAUUCCUCCCCCAUGGAUG   71 Target Full Sequence	2.0	Sequence 7157 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241162.1	ncRNA:24   UUCUCCUAAAGAGGGGGUACCUAG   1   |||=|||||*|||||||||||||* targets:48   AAGGGGAUUCCUCCCCCAUGGAUG   71 Target Full Sequence	2.0	Sequence 7157 from Patent EP2985353	NA	coding protein	psRNATarget
HI409032.1	ncRNA:24   UUCUCCUAAAGAGGGGGUACCUAG   1   |||=|||||*|||||||||||||* targets:48   AAGGGGAUUCCUCCCCCAUGGAUG   71 Target Full Sequence	2.0	Sequence 7157 from Patent EP2074227	NA	coding protein	psRNATarget
HI402997.1	ncRNA:24   UUCUCCUAAAGAGGGGGUACCUAG   1   |||=|*|||*|||||||||||||| targets:78   AAGGGAAUUACUCCCCCAUGGAUC   101 Target Full Sequence	2.0	Sequence 1122 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235127.1	ncRNA:24   UUCUCCUAAAGAGGGGGUACCUAG   1   |||=|*|||*|||||||||||||| targets:78   AAGGGAAUUACUCCCCCAUGGAUC   101 Target Full Sequence	2.0	Sequence 1122 from Patent EP2985353	NA	coding protein	psRNATarget
JB163458.1	ncRNA:24   UUCUCCUAAAGAGGGGGUACCUAG   1   |||=|*|||*|||||||||||||| targets:78   AAGGGAAUUACUCCCCCAUGGAUC   101 Target Full Sequence	2.0	Sequence 1122 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008649119.2	ncRNA:24   UUCUCCUAAAGAGGGGGUACCUAG   1   |||-|||||*|||||||||||||| targets:4   AAG-GGAUUCCUCCCCCAUGGAUC   26 Target Full Sequence	1.0	PREDICTED: Zea mays PHD transcription factor (PHD35), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008681394.2	ncRNA:24   UUCUCCUAAAGAGGGGGUACCUAG   1   |||=|*|||*|||||||||||||| targets:4478   AAGGGAAUUCCUCCCCCAUGGAUC   4501 Target Full Sequence	2.0	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008681392.2	ncRNA:24   UUCUCCUAAAGAGGGGGUACCUAG   1   |||=|*|||*|||||||||||||| targets:4652   AAGGGAAUUCCUCCCCCAUGGAUC   4675 Target Full Sequence	2.0	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552825.1	ncRNA:24   UUCUCCUAAAGAGGGGGUACCUAG   1   |||=|*|||*|||||||||||||| targets:4743   AAGGGAAUUCCUCCCCCAUGGAUC   4766 Target Full Sequence	2.0	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT085112.1	ncRNA:24   UUCUCCUAAAGAGGGGGUACCUAG   1   |||=*|*||||||||||||*|||| targets:1141   AAGGUGUUUUCUCCCCCAUAGAUC   1164 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0292N05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001348678.1	ncRNA:24   UUCUCCUAAAGAGGGGGUACCUAG   1   |||=*|*||||||||||||*|||| targets:3614   AAGGUGUUUUCUCCCCCAUAGAUC   3637 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384314 (LOC100384314), mRNA	NA	coding protein	psRNATarget