Search result

BaseInfo

ncRNA ID	novel_zma_miR653
Species	Zea mays
Class	miRNA
Genome position	Chr1:234434099-234434177 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089714;SRR5451003;SRR2089707
Length	24
Mature sequence(if miRNA)	1 - GUUUGGAGGGAUUGGAGAGUGUAU - 24
Stem-loop(if miRNA)	--GU      -       AGA      AAAUUCCUAAUAAA     UUGGAG GGAUUGG   GUGUAU              U     |||||| |||||||   ||||||     AACUUU CCUAACU   UACAUA              C CCCU      A       --A      ACACUAUCAAAAAA
Stem-loop sequence	GUUUGGAGGGAUUGGAGAGUGUAUAAAUUCCUAAUAAAUCAAAAAACUAUCACAAUACAUAUCAAUCCAUUUCAAUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020540884.1	ncRNA:24   UAUGUGAGAGGUUAGGGAGGUUUG   1   ||||||||||=||||||||||||| targets:3922   AUACACUCUCUAAUCCCUCCAAAC   3945 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC109940748), mRNA	NA	coding protein	psRNATarget
EZ074421.1	ncRNA:24   UAUGUGAGAGGUUAGGGAGGUUUG   1   ||||||||||||||||||*||||| targets:27   AUACACUCUCCAAUCCCUACAAAC   50 Target Full Sequence	1.5	TSA: Zea mays contig10058, mRNA sequence	NA	coding protein	psRNATarget
XM_008666548.1	ncRNA:24   UAUGUGAGAGGUUAGGGAGGUUUG   1   |||=|||||||*|||||||||||| targets:226   AUAUACUCUCCCAUCCCUCCAAAC   249 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103643386 (LOC103643386), mRNA	NA	coding protein	psRNATarget
BT039083.1	ncRNA:24   UAUGUGAGAGGUUAGGGAGGUUUG   1   ||||*||||||||||||||||||* targets:1279   AUACCCUCUCCAAUCCCUCCAAAA   1302 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0368P21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020551172.1	ncRNA:24   UAUGUGAGAGGUUAGGGAGGUUUG   1   ||||*||||||||||||||||||* targets:1318   AUACCCUCUCCAAUCCCUCCAAAA   1341 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100281458 (pco141348), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU950079.1	ncRNA:24   UAUGUGAGAGGUUAGGGAGGUUUG   1   |*|||||||==||||||||||||| targets:1624   AAACACUCUUUAAUCCCUCCAAAC   1647 Target Full Sequence	2.0	Zea mays clone 460377 mRNA sequence	NA	coding protein	psRNATarget
EU950079.1	ncRNA:24   UAUGUGAGAGGUUAGGGAGGUUUG   1   |*|=*||||=|||||=|||||||| targets:1664   AAAUUCUCUUCAAUCUCUCCAAAC   1687 Target Full Sequence	2.5	Zea mays clone 460377 mRNA sequence	NA	coding protein	psRNATarget