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BaseInfo

ncRNA ID	novel_zma_miR650
Species	Zea mays
Class	miRNA
Genome position	Chr9:121694582-121694745 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089715;SRR2089707
Length	24
Mature sequence(if miRNA)	1 - AGACUCGUGUUGGUCUGUGUGGAU - 24
Stem-loop(if miRNA)	--                   U   UG  CUU     A         A CAA                   --------    UAA   AGACUCGUGUUGGUCUGUG GGA  GU   UGAUC UAGAGGGCU C   GAGUAAGUACCGCCGGUCC        GAUG   C   ||||||||||||||||||| |||  ||   ||||| ||||||||| |   |||||||||||||||||||        ||||   UCUGAGCACAACCAGACAC CCU  UA   ACUAG AUCUCUCGA G   CUCAUUCAUGGUGGCCAGG        CUAC   A UU                   C   GU  UAU     G         C AUC                   UCCCUAAC    CCC
Stem-loop sequence	AGACUCGUGUUGGUCUGUGUGGAUGGUCUUUGAUCAUAGAGGGCUACCAAGAGUAAGUACCGCCGGUCCGAUGUAACACCCCAUCCAAUCCCUGGACCGGUGGUACUUACUCCUAGCAGCUCUCUAGGAUCAUAUAUUGUCCCCACAGACCAACACGAGUCUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT069211.2	ncRNA:24   UAGGUGUGUCUGGUUGUGCUCAGA   1   ||||*||||||||||||||||||| targets:689   AUCCCCACAGACCAACACGAGUCU   712 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0334L03 mRNA, complete cds	NA	coding protein	psRNATarget
EU940966.1	ncRNA:24   UA---GGUGUGUCUGGUUGUGCUCAGA   1   ||---||*||||||||||||||||||| targets:449   AUUGGCCCCACAGACCAACACGAGUCU   475 Target Full Sequence	0.0	Zea mays clone 1223688 mRNA sequence	NA	coding protein	psRNATarget
BT041365.1	ncRNA:24   UAGGUGUGUCUGGUUGUGCUCAGA   1   =|||*=||||||||||||||||=| targets:2329   GUCCCUACAGACCAACACGAGUUU   2352 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0056K22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147964.1	ncRNA:24   UAGGUGUGUCUGGUUGUGCUCAGA   1   =|||*=||||||||||||||||=| targets:2329   GUCCCUACAGACCAACACGAGUUU   2352 Target Full Sequence	2.5	Zea mays Pentatricopeptide repeat-containing protein mitochondrial (LOC100273546), mRNA	NA	coding protein	psRNATarget