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BaseInfo

ncRNA ID	novel_zma_miR644
Species	Zea mays
Class	miRNA
Genome position	Chr9:92824065-92824172 [+]
Reference genome	RefGen_v4
Source	SRR2089709;SRR2089713;SRR2089698;SRR2089699;SRR2089702;SRR2089706;SRR2089707
Length	21
Mature sequence(if miRNA)	1 - CCAGAAGGGGAUUGGAGGAGA - 21
Stem-loop(if miRNA)	--CC                A     A    C           ----     AAUC     AGAAGGGGAUUGGAGG GAUUA AUCC CUCCUAGUCGA    GAUUA    C     |||||||||||||||| ||||| |||| |||||||||||    |||||     UCUUCCCCUAACCUUC CUGAU UAGG GAGGAUCAGUU    CUGAU    C UAGA                C     G    U           AAAA     CUUC
Stem-loop sequence	CCAGAAGGGGAUUGGAGGAGAUUAAAUCCCCUCCUAGUCGAGAUUAAAUCCCCUUCUAGUCAAAAUUGACUAGGAGUGGAUGUAGUCCCUUCCAAUCCCCUUCUAGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001157439.1	ncRNA:21   AGAGGAGGUUAGGGGAAGACC   1   ||||||||=|||||||||||* targets:529   UCUCCUCCGAUCCCCUUCUGA   549 Target Full Sequence	2.5	Zea mays protein transport protein SEC61 gamma subunit (LOC100284544), mRNA	NA	coding protein	psRNATarget
EU968801.1	ncRNA:21   AGAGGAGGUUAGGGGAAGACC   1   ||||||||=|||||||||||* targets:529   UCUCCUCCGAUCCCCUUCUGA   549 Target Full Sequence	2.5	Zea mays clone 324211 protein transport protein SEC61 gamma subunit mRNA, complete cds	NA	coding protein	psRNATarget
EZ049235.1	ncRNA:21   AGAGGAGGUUAGGGGAAGACC   1   ||*|||=|||||||||||||| targets:1   UCCCCUUCAAUCCCCUUCUGG   21 Target Full Sequence	2.0	TSA: Zea mays contig50353, mRNA sequence	NA	coding protein	psRNATarget
JB163489.1	ncRNA:21   AGAGGAGGUUAGGGGAAGACC   1   *|*||||||||||||*||||| targets:84   ACCCCUCCAAUCCCCAUCUGG   104 Target Full Sequence	2.5	Sequence 1153 from Patent EP2559767	NA	coding protein	psRNATarget
HI403028.1	ncRNA:21   AGAGGAGGUUAGGGGAAGACC   1   *|*||||||||||||*||||| targets:84   ACCCCUCCAAUCCCCAUCUGG   104 Target Full Sequence	2.5	Sequence 1153 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235158.1	ncRNA:21   AGAGGAGGUUAGGGGAAGACC   1   *|*||||||||||||*||||| targets:84   ACCCCUCCAAUCCCCAUCUGG   104 Target Full Sequence	2.5	Sequence 1153 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238926.1	ncRNA:21   AGAGGAGGUUAGGGGAAGACC   1   *|*||||||||*||||||||| targets:97   ACCCCUCCAAUACCCUUCUGG   117 Target Full Sequence	2.5	Sequence 4921 from Patent EP2985353	NA	coding protein	psRNATarget
HI406796.1	ncRNA:21   AGAGGAGGUUAGGGGAAGACC   1   *|*||||||||*||||||||| targets:97   ACCCCUCCAAUACCCUUCUGG   117 Target Full Sequence	2.5	Sequence 4921 from Patent EP2074227	NA	coding protein	psRNATarget
JB167257.1	ncRNA:21   AGAGGAGGUUAGGGGAAGACC   1   *|*||||||||*||||||||| targets:97   ACCCCUCCAAUACCCUUCUGG   117 Target Full Sequence	2.5	Sequence 4921 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020540164.1	ncRNA:21   AGAGGAGGUUAGGGGAAGACC   1   *|*||||||||||||*||||| targets:1604   ACCCCUCCAAUCCCCCUCUGG   1624 Target Full Sequence	2.5	PREDICTED: Zea mays Cysteine-rich repeat secretory protein 3 (LOC107521955), transcript variant X1, mRNA	NA	coding protein	psRNATarget