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BaseInfo

ncRNA ID	novel_zma_miR643
Species	Zea mays
Class	miRNA
Genome position	Chr4:156124034-156124126 [+]
Reference genome	RefGen_v4
Source	SRR1583943;SRR2638137;SRR2647221;SRR2647343;SRR2647385;SRR2647386;SRR2647387;SRR2647388;SRR2647389;SRR2647390;SRR2647391;SRR2647467
Length	24
Mature sequence(if miRNA)	1 - AGUCAACGAUGUCAUAUAUUUGUG - 24
Stem-loop(if miRNA)	--     ACGA     --    U     AACGGA  UA UACUAGUUAGGU   AGUCA    UGUCA  UAUA UUGUG      GG  G            G   |||||    |||||  |||| |||||      ||  |   UCAGU    AUAGU  AUAU AACAC      GU  A            C UA     --GA     UU    U     ---ACA  -- GCAUUACGUACC
Stem-loop sequence	AGUCAACGAUGUCAUAUAUUUGUGAACGGAGGUAGUACUAGUUAGGUGCCCAUGCAUUACGAUGACACACAAUUAUAUUUGAUAAGUGACUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020547091.1	ncRNA:24   GUGUUUAUAUACUGUAGCAACUGA   1   ||=|||||||||||||||||||=| targets:2006   CAUAAAUAUAUGACAUCGUUGAUU   2029 Target Full Sequence	1.5	PREDICTED: Zea mays xyloglucan galactosyltransferase KATAMARI1 homolog (LOC103649427), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008673697.2	ncRNA:24   GUGUUUAUAUACUGUAGCAACUGA   1   ||=|||||||||||||||||||=| targets:2093   CAUAAAUAUAUGACAUCGUUGAUU   2116 Target Full Sequence	1.5	PREDICTED: Zea mays xyloglucan galactosyltransferase KATAMARI1 homolog (LOC103649427), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT017322.1	ncRNA:24   GUGUUUAUAUACUGUAGCAACUGA   1   =|=|||||*||||||||||||||| targets:612   UAUAAAUAAAUGACAUCGUUGACU   635 Target Full Sequence	1.0	Zea mays clone EL01N0319E06.c mRNA sequence	NA	coding protein	psRNATarget
HI403404.1	ncRNA:24   GUGUUUAUAUACUGUAGCAACUGA   1   |*=||||||||||||*|||||||| targets:10   CUUAAAUAUAUGACACCGUUGACU   33 Target Full Sequence	1.5	Sequence 1529 from Patent EP2074227	NA	coding protein	psRNATarget
JB163865.1	ncRNA:24   GUGUUUAUAUACUGUAGCAACUGA   1   |*=||||||||||||*|||||||| targets:10   CUUAAAUAUAUGACACCGUUGACU   33 Target Full Sequence	1.5	Sequence 1529 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235534.1	ncRNA:24   GUGUUUAUAUACUGUAGCAACUGA   1   |*=||||||||||||*|||||||| targets:10   CUUAAAUAUAUGACACCGUUGACU   33 Target Full Sequence	1.5	Sequence 1529 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001156490.2	ncRNA:24   GUGUUUAUAUACUGUAGCAACUGA   1   =|=|||||*||||||*|||||||| targets:1488   UAUAAAUAAAUGACAACGUUGACU   1511 Target Full Sequence	2.5	Zea mays mRNA (LOC100283589), mRNA	NA	coding protein	psRNATarget
EU965236.1	ncRNA:24   GUGUUUAUAUACUGUAGCAACUGA   1   =|=|||||*||||||*|||||||| targets:1489   UAUAAAUAAAUGACAACGUUGACU   1512 Target Full Sequence	2.5	Zea mays clone 284686 mRNA mRNA, complete cds	NA	coding protein	psRNATarget